Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23340

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23330 and AO356_23335 are separated by 195 nucleotidesAO356_23335 and AO356_23340 are separated by 172 nucleotidesAO356_23340 and AO356_23345 are separated by 342 nucleotides AO356_23330: AO356_23330 - aminoglycoside phosphotransferase, at 5,231,429 to 5,232,496 _23330 AO356_23335: AO356_23335 - hypothetical protein, at 5,232,692 to 5,233,087 _23335 AO356_23340: AO356_23340 - chemotaxis protein, at 5,233,260 to 5,235,287 _23340 AO356_23345: AO356_23345 - hypothetical protein, at 5,235,630 to 5,236,736 _23345 Position (kb) 5233 5234 5235 5236Strain fitness (log2 ratio) -2 -1 0 1 2at 5232.348 kb on + strand, within AO356_23330at 5232.348 kb on + strand, within AO356_23330at 5232.348 kb on + strand, within AO356_23330at 5232.487 kb on + strandat 5232.488 kb on - strandat 5232.513 kb on + strandat 5232.545 kb on - strandat 5232.583 kb on + strandat 5232.583 kb on + strandat 5232.584 kb on - strandat 5232.584 kb on - strandat 5232.585 kb on + strandat 5232.585 kb on + strandat 5232.585 kb on + strandat 5232.586 kb on - strandat 5232.586 kb on - strandat 5232.586 kb on - strandat 5232.586 kb on - strandat 5232.586 kb on - strandat 5232.655 kb on + strandat 5232.655 kb on + strandat 5232.655 kb on + strandat 5232.713 kb on - strandat 5233.612 kb on - strand, within AO356_23340at 5233.783 kb on + strand, within AO356_23340at 5233.784 kb on - strand, within AO356_23340at 5233.784 kb on - strand, within AO356_23340at 5233.836 kb on + strand, within AO356_23340at 5234.018 kb on - strand, within AO356_23340at 5234.042 kb on - strand, within AO356_23340at 5234.105 kb on + strand, within AO356_23340at 5234.276 kb on - strand, within AO356_23340at 5234.435 kb on - strand, within AO356_23340at 5234.672 kb on - strand, within AO356_23340at 5234.767 kb on + strand, within AO356_23340at 5234.768 kb on - strand, within AO356_23340at 5234.768 kb on - strand, within AO356_23340at 5234.768 kb on - strand, within AO356_23340at 5234.780 kb on + strand, within AO356_23340at 5234.821 kb on + strand, within AO356_23340at 5234.822 kb on - strand, within AO356_23340at 5234.822 kb on - strand, within AO356_23340at 5234.831 kb on + strand, within AO356_23340at 5234.876 kb on + strand, within AO356_23340at 5234.877 kb on - strand, within AO356_23340at 5235.038 kb on - strand, within AO356_23340at 5235.186 kb on + strandat 5235.186 kb on + strandat 5235.187 kb on - strandat 5235.187 kb on - strandat 5235.279 kb on + strandat 5235.280 kb on - strandat 5235.326 kb on + strandat 5235.373 kb on + strandat 5235.373 kb on + strandat 5235.374 kb on - strandat 5235.374 kb on - strandat 5235.374 kb on - strandat 5235.374 kb on - strandat 5235.374 kb on - strandat 5235.374 kb on - strandat 5235.392 kb on + strandat 5235.392 kb on + strandat 5235.412 kb on - strandat 5235.432 kb on + strandat 5235.433 kb on - strandat 5235.460 kb on + strandat 5235.479 kb on - strandat 5235.753 kb on + strand, within AO356_23345at 5235.765 kb on + strand, within AO356_23345at 5235.765 kb on + strand, within AO356_23345at 5235.765 kb on + strand, within AO356_23345at 5235.765 kb on + strand, within AO356_23345at 5235.766 kb on - strand, within AO356_23345at 5235.803 kb on + strand, within AO356_23345at 5235.846 kb on + strand, within AO356_23345at 5235.846 kb on + strand, within AO356_23345at 5235.846 kb on + strand, within AO356_23345at 5235.846 kb on + strand, within AO356_23345at 5235.846 kb on + strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.906 kb on + strand, within AO356_23345at 5235.906 kb on + strand, within AO356_23345at 5235.907 kb on - strand, within AO356_23345at 5235.907 kb on - strand, within AO356_23345at 5235.907 kb on - strand, within AO356_23345at 5235.907 kb on - strand, within AO356_23345at 5235.907 kb on - strand, within AO356_23345at 5235.907 kb on - strand, within AO356_23345at 5236.057 kb on + strand, within AO356_23345at 5236.057 kb on + strand, within AO356_23345at 5236.058 kb on - strand, within AO356_23345at 5236.098 kb on + strand, within AO356_23345at 5236.098 kb on + strand, within AO356_23345at 5236.098 kb on + strand, within AO356_23345at 5236.098 kb on + strand, within AO356_23345at 5236.098 kb on + strand, within AO356_23345at 5236.099 kb on - strand, within AO356_23345at 5236.099 kb on - strand, within AO356_23345at 5236.099 kb on - strand, within AO356_23345at 5236.099 kb on - strand, within AO356_23345at 5236.099 kb on - strand, within AO356_23345at 5236.099 kb on - strand, within AO356_23345at 5236.099 kb on - strand, within AO356_23345at 5236.229 kb on + strand, within AO356_23345at 5236.229 kb on + strand, within AO356_23345at 5236.230 kb on - strand, within AO356_23345at 5236.233 kb on + strand, within AO356_23345at 5236.234 kb on - strand, within AO356_23345at 5236.244 kb on + strand, within AO356_23345at 5236.244 kb on + strand, within AO356_23345at 5236.245 kb on - strand, within AO356_23345at 5236.245 kb on - strand, within AO356_23345at 5236.245 kb on - strand, within AO356_23345at 5236.248 kb on + strand, within AO356_23345at 5236.249 kb on - strand, within AO356_23345at 5236.249 kb on - strand, within AO356_23345at 5236.249 kb on - strand, within AO356_23345at 5236.249 kb on - strand, within AO356_23345

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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5,232,348 + AO356_23330 0.86 -0.3
5,232,348 + AO356_23330 0.86 +0.5
5,232,348 + AO356_23330 0.86 +1.2
5,232,487 + +1.2
5,232,488 - -0.0
5,232,513 + -0.1
5,232,545 - -0.5
5,232,583 + +1.1
5,232,583 + +0.3
5,232,584 - -0.0
5,232,584 - -0.8
5,232,585 + -0.4
5,232,585 + +0.9
5,232,585 + -0.2
5,232,586 - +0.3
5,232,586 - -0.7
5,232,586 - -0.1
5,232,586 - -1.6
5,232,586 - -1.3
5,232,655 + +0.0
5,232,655 + +0.7
5,232,655 + +0.2
5,232,713 - -0.2
5,233,612 - AO356_23340 0.17 -0.6
5,233,783 + AO356_23340 0.26 +0.7
5,233,784 - AO356_23340 0.26 -0.1
5,233,784 - AO356_23340 0.26 +1.3
5,233,836 + AO356_23340 0.28 +1.1
5,234,018 - AO356_23340 0.37 -0.1
5,234,042 - AO356_23340 0.39 +0.4
5,234,105 + AO356_23340 0.42 -0.7
5,234,276 - AO356_23340 0.50 -0.1
5,234,435 - AO356_23340 0.58 -0.3
5,234,672 - AO356_23340 0.70 +0.5
5,234,767 + AO356_23340 0.74 +0.4
5,234,768 - AO356_23340 0.74 -1.0
5,234,768 - AO356_23340 0.74 +0.5
5,234,768 - AO356_23340 0.74 +0.7
5,234,780 + AO356_23340 0.75 +0.4
5,234,821 + AO356_23340 0.77 +0.4
5,234,822 - AO356_23340 0.77 -1.9
5,234,822 - AO356_23340 0.77 -0.1
5,234,831 + AO356_23340 0.77 -0.9
5,234,876 + AO356_23340 0.80 +0.6
5,234,877 - AO356_23340 0.80 +0.6
5,235,038 - AO356_23340 0.88 +0.1
5,235,186 + +0.8
5,235,186 + -0.2
5,235,187 - +0.9
5,235,187 - +0.6
5,235,279 + -0.6
5,235,280 - +0.5
5,235,326 + -1.1
5,235,373 + -0.7
5,235,373 + -0.8
5,235,374 - -0.0
5,235,374 - -0.5
5,235,374 - -0.1
5,235,374 - +0.0
5,235,374 - +0.0
5,235,374 - +0.5
5,235,392 + +0.9
5,235,392 + -0.1
5,235,412 - -0.3
5,235,432 + +0.6
5,235,433 - -0.4
5,235,460 + -0.6
5,235,479 - +1.1
5,235,753 + AO356_23345 0.11 +0.1
5,235,765 + AO356_23345 0.12 -0.4
5,235,765 + AO356_23345 0.12 -0.1
5,235,765 + AO356_23345 0.12 -0.3
5,235,765 + AO356_23345 0.12 +0.2
5,235,766 - AO356_23345 0.12 -0.2
5,235,803 + AO356_23345 0.16 +0.3
5,235,846 + AO356_23345 0.20 +0.3
5,235,846 + AO356_23345 0.20 +0.1
5,235,846 + AO356_23345 0.20 -0.2
5,235,846 + AO356_23345 0.20 +0.1
5,235,846 + AO356_23345 0.20 -0.6
5,235,847 - AO356_23345 0.20 -0.5
5,235,847 - AO356_23345 0.20 +1.0
5,235,847 - AO356_23345 0.20 +0.1
5,235,847 - AO356_23345 0.20 +0.5
5,235,847 - AO356_23345 0.20 +1.0
5,235,847 - AO356_23345 0.20 -0.4
5,235,847 - AO356_23345 0.20 -0.4
5,235,847 - AO356_23345 0.20 -1.4
5,235,906 + AO356_23345 0.25 -0.8
5,235,906 + AO356_23345 0.25 +0.4
5,235,907 - AO356_23345 0.25 +1.1
5,235,907 - AO356_23345 0.25 -0.7
5,235,907 - AO356_23345 0.25 -0.1
5,235,907 - AO356_23345 0.25 +0.2
5,235,907 - AO356_23345 0.25 +0.5
5,235,907 - AO356_23345 0.25 -0.0
5,236,057 + AO356_23345 0.39 -0.3
5,236,057 + AO356_23345 0.39 -0.5
5,236,058 - AO356_23345 0.39 +0.2
5,236,098 + AO356_23345 0.42 -1.4
5,236,098 + AO356_23345 0.42 +0.5
5,236,098 + AO356_23345 0.42 -0.0
5,236,098 + AO356_23345 0.42 +0.2
5,236,098 + AO356_23345 0.42 -0.0
5,236,099 - AO356_23345 0.42 -0.5
5,236,099 - AO356_23345 0.42 +0.3
5,236,099 - AO356_23345 0.42 -1.3
5,236,099 - AO356_23345 0.42 +0.5
5,236,099 - AO356_23345 0.42 +0.2
5,236,099 - AO356_23345 0.42 +0.1
5,236,099 - AO356_23345 0.42 +0.3
5,236,229 + AO356_23345 0.54 -0.5
5,236,229 + AO356_23345 0.54 -0.0
5,236,230 - AO356_23345 0.54 +0.1
5,236,233 + AO356_23345 0.54 -0.3
5,236,234 - AO356_23345 0.55 +0.1
5,236,244 + AO356_23345 0.55 +0.4
5,236,244 + AO356_23345 0.55 -0.2
5,236,245 - AO356_23345 0.56 -0.4
5,236,245 - AO356_23345 0.56 +0.8
5,236,245 - AO356_23345 0.56 +0.0
5,236,248 + AO356_23345 0.56 +0.1
5,236,249 - AO356_23345 0.56 -0.0
5,236,249 - AO356_23345 0.56 +1.9
5,236,249 - AO356_23345 0.56 +0.4
5,236,249 - AO356_23345 0.56 +0.4

Or see this region's nucleotide sequence