Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22625

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22620 and AO356_22625 are separated by 40 nucleotidesAO356_22625 and AO356_22630 are separated by 10 nucleotides AO356_22620: AO356_22620 - ATPase, at 5,054,430 to 5,055,506 _22620 AO356_22625: AO356_22625 - nitrate ABC transporter ATP-binding protein, at 5,055,547 to 5,056,851 _22625 AO356_22630: AO356_22630 - sulfonate ABC transporter permease, at 5,056,862 to 5,058,583 _22630 Position (kb) 5055 5056 5057Strain fitness (log2 ratio) -3 -2 -1 0 1at 5054.590 kb on + strand, within AO356_22620at 5054.591 kb on - strand, within AO356_22620at 5055.205 kb on + strand, within AO356_22620at 5055.205 kb on + strand, within AO356_22620at 5055.205 kb on + strand, within AO356_22620at 5055.205 kb on + strand, within AO356_22620at 5055.206 kb on - strand, within AO356_22620at 5055.206 kb on - strand, within AO356_22620at 5055.534 kb on - strandat 5055.534 kb on - strandat 5055.534 kb on - strandat 5055.536 kb on - strandat 5055.591 kb on - strandat 5055.639 kb on + strandat 5055.640 kb on - strandat 5055.758 kb on + strand, within AO356_22625at 5055.758 kb on + strand, within AO356_22625at 5055.758 kb on + strand, within AO356_22625at 5055.758 kb on + strand, within AO356_22625at 5055.759 kb on - strand, within AO356_22625at 5055.759 kb on - strand, within AO356_22625at 5055.759 kb on - strand, within AO356_22625at 5055.759 kb on - strand, within AO356_22625at 5055.759 kb on - strand, within AO356_22625at 5055.759 kb on - strand, within AO356_22625at 5055.762 kb on + strand, within AO356_22625at 5055.762 kb on + strand, within AO356_22625at 5055.762 kb on + strand, within AO356_22625at 5055.762 kb on + strand, within AO356_22625at 5055.763 kb on - strand, within AO356_22625at 5055.763 kb on - strand, within AO356_22625at 5055.763 kb on - strand, within AO356_22625at 5055.763 kb on - strand, within AO356_22625at 5056.100 kb on + strand, within AO356_22625at 5056.100 kb on + strand, within AO356_22625at 5056.100 kb on + strand, within AO356_22625at 5056.100 kb on + strand, within AO356_22625at 5056.100 kb on + strand, within AO356_22625at 5056.101 kb on - strand, within AO356_22625at 5056.101 kb on - strand, within AO356_22625at 5056.101 kb on - strand, within AO356_22625at 5056.101 kb on - strand, within AO356_22625at 5056.245 kb on + strand, within AO356_22625at 5056.245 kb on + strand, within AO356_22625at 5056.333 kb on + strand, within AO356_22625at 5056.334 kb on - strand, within AO356_22625at 5056.334 kb on - strand, within AO356_22625at 5056.334 kb on - strand, within AO356_22625at 5056.473 kb on + strand, within AO356_22625at 5056.522 kb on + strand, within AO356_22625at 5056.797 kb on - strandat 5056.840 kb on + strandat 5056.841 kb on - strandat 5056.841 kb on - strandat 5056.897 kb on - strandat 5056.897 kb on - strandat 5057.025 kb on + strandat 5057.025 kb on + strandat 5057.025 kb on + strandat 5057.025 kb on + strandat 5057.026 kb on - strandat 5057.026 kb on - strandat 5057.026 kb on - strandat 5057.026 kb on - strandat 5057.026 kb on - strandat 5057.112 kb on + strand, within AO356_22630at 5057.112 kb on + strand, within AO356_22630at 5057.112 kb on + strand, within AO356_22630at 5057.112 kb on + strand, within AO356_22630at 5057.112 kb on + strand, within AO356_22630at 5057.113 kb on - strand, within AO356_22630at 5057.113 kb on - strand, within AO356_22630at 5057.113 kb on - strand, within AO356_22630at 5057.113 kb on - strand, within AO356_22630at 5057.113 kb on - strand, within AO356_22630at 5057.113 kb on - strand, within AO356_22630at 5057.113 kb on - strand, within AO356_22630at 5057.113 kb on - strand, within AO356_22630at 5057.115 kb on + strand, within AO356_22630at 5057.116 kb on - strand, within AO356_22630at 5057.241 kb on + strand, within AO356_22630at 5057.241 kb on + strand, within AO356_22630at 5057.242 kb on - strand, within AO356_22630at 5057.242 kb on - strand, within AO356_22630at 5057.242 kb on - strand, within AO356_22630at 5057.242 kb on - strand, within AO356_22630at 5057.242 kb on - strand, within AO356_22630at 5057.242 kb on - strand, within AO356_22630at 5057.433 kb on - strand, within AO356_22630at 5057.433 kb on - strand, within AO356_22630at 5057.433 kb on - strand, within AO356_22630at 5057.433 kb on - strand, within AO356_22630at 5057.494 kb on + strand, within AO356_22630at 5057.494 kb on + strand, within AO356_22630at 5057.736 kb on + strand, within AO356_22630at 5057.736 kb on + strand, within AO356_22630at 5057.829 kb on + strand, within AO356_22630at 5057.829 kb on + strand, within AO356_22630at 5057.829 kb on + strand, within AO356_22630

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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5,054,590 + AO356_22620 0.15 +0.6
5,054,591 - AO356_22620 0.15 -0.0
5,055,205 + AO356_22620 0.72 -0.2
5,055,205 + AO356_22620 0.72 +0.1
5,055,205 + AO356_22620 0.72 -0.8
5,055,205 + AO356_22620 0.72 -0.0
5,055,206 - AO356_22620 0.72 +0.2
5,055,206 - AO356_22620 0.72 +0.4
5,055,534 - +0.2
5,055,534 - +0.2
5,055,534 - -0.2
5,055,536 - -0.2
5,055,591 - +0.7
5,055,639 + +0.4
5,055,640 - -0.4
5,055,758 + AO356_22625 0.16 -0.6
5,055,758 + AO356_22625 0.16 -1.0
5,055,758 + AO356_22625 0.16 +0.3
5,055,758 + AO356_22625 0.16 -1.5
5,055,759 - AO356_22625 0.16 +0.7
5,055,759 - AO356_22625 0.16 -0.4
5,055,759 - AO356_22625 0.16 -1.3
5,055,759 - AO356_22625 0.16 -0.3
5,055,759 - AO356_22625 0.16 -0.5
5,055,759 - AO356_22625 0.16 +0.9
5,055,762 + AO356_22625 0.16 +0.1
5,055,762 + AO356_22625 0.16 +0.6
5,055,762 + AO356_22625 0.16 +0.3
5,055,762 + AO356_22625 0.16 +0.3
5,055,763 - AO356_22625 0.17 -1.2
5,055,763 - AO356_22625 0.17 -0.3
5,055,763 - AO356_22625 0.17 +0.8
5,055,763 - AO356_22625 0.17 +1.4
5,056,100 + AO356_22625 0.42 +0.8
5,056,100 + AO356_22625 0.42 -1.1
5,056,100 + AO356_22625 0.42 +0.6
5,056,100 + AO356_22625 0.42 +0.0
5,056,100 + AO356_22625 0.42 -0.1
5,056,101 - AO356_22625 0.42 -0.4
5,056,101 - AO356_22625 0.42 +0.0
5,056,101 - AO356_22625 0.42 -1.2
5,056,101 - AO356_22625 0.42 -0.8
5,056,245 + AO356_22625 0.53 +0.4
5,056,245 + AO356_22625 0.53 -0.3
5,056,333 + AO356_22625 0.60 -0.1
5,056,334 - AO356_22625 0.60 +0.5
5,056,334 - AO356_22625 0.60 -0.1
5,056,334 - AO356_22625 0.60 +0.0
5,056,473 + AO356_22625 0.71 -0.4
5,056,522 + AO356_22625 0.75 -3.1
5,056,797 - +0.3
5,056,840 + +0.3
5,056,841 - +0.2
5,056,841 - +0.0
5,056,897 - -0.3
5,056,897 - +1.3
5,057,025 + +1.1
5,057,025 + -0.8
5,057,025 + -1.3
5,057,025 + -1.2
5,057,026 - -1.1
5,057,026 - +0.5
5,057,026 - +1.0
5,057,026 - +0.4
5,057,026 - -0.3
5,057,112 + AO356_22630 0.15 -0.2
5,057,112 + AO356_22630 0.15 -0.6
5,057,112 + AO356_22630 0.15 -0.1
5,057,112 + AO356_22630 0.15 -0.3
5,057,112 + AO356_22630 0.15 -0.1
5,057,113 - AO356_22630 0.15 -0.1
5,057,113 - AO356_22630 0.15 -0.9
5,057,113 - AO356_22630 0.15 -0.2
5,057,113 - AO356_22630 0.15 -0.2
5,057,113 - AO356_22630 0.15 -0.2
5,057,113 - AO356_22630 0.15 +0.5
5,057,113 - AO356_22630 0.15 -0.6
5,057,113 - AO356_22630 0.15 -1.1
5,057,115 + AO356_22630 0.15 -0.1
5,057,116 - AO356_22630 0.15 +0.2
5,057,241 + AO356_22630 0.22 -2.2
5,057,241 + AO356_22630 0.22 -0.8
5,057,242 - AO356_22630 0.22 +0.2
5,057,242 - AO356_22630 0.22 +0.0
5,057,242 - AO356_22630 0.22 -0.3
5,057,242 - AO356_22630 0.22 +1.0
5,057,242 - AO356_22630 0.22 -1.4
5,057,242 - AO356_22630 0.22 -0.3
5,057,433 - AO356_22630 0.33 -0.4
5,057,433 - AO356_22630 0.33 +1.0
5,057,433 - AO356_22630 0.33 +0.9
5,057,433 - AO356_22630 0.33 -0.7
5,057,494 + AO356_22630 0.37 +0.1
5,057,494 + AO356_22630 0.37 -0.7
5,057,736 + AO356_22630 0.51 -0.7
5,057,736 + AO356_22630 0.51 -0.8
5,057,829 + AO356_22630 0.56 +0.6
5,057,829 + AO356_22630 0.56 +0.1
5,057,829 + AO356_22630 0.56 +0.4

Or see this region's nucleotide sequence