Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22230

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22210 and AO356_22215 overlap by 4 nucleotidesAO356_22215 and AO356_22220 overlap by 4 nucleotidesAO356_22220 and AO356_22225 overlap by 1 nucleotidesAO356_22225 and AO356_22230 overlap by 1 nucleotidesAO356_22230 and AO356_22235 are separated by 267 nucleotidesAO356_22235 and AO356_22240 are separated by 2 nucleotides AO356_22210: AO356_22210 - hypothetical protein, at 4,972,246 to 4,973,247 _22210 AO356_22215: AO356_22215 - sulfur relay protein TusE, at 4,973,244 to 4,973,579 _22215 AO356_22220: AO356_22220 - sulfur relay protein DsrH, at 4,973,576 to 4,973,869 _22220 AO356_22225: AO356_22225 - sulfur relay protein TusC, at 4,973,869 to 4,974,231 _22225 AO356_22230: AO356_22230 - sulfurtransferase, at 4,974,231 to 4,974,623 _22230 AO356_22235: AO356_22235 - DNA repair protein, at 4,974,891 to 4,975,226 _22235 AO356_22240: AO356_22240 - hypothetical protein, at 4,975,229 to 4,975,489 _22240 Position (kb) 4974 4975Strain fitness (log2 ratio) -1 0 1at 4974.657 kb on - strandat 4974.700 kb on - strandat 4974.711 kb on + strandat 4974.711 kb on + strandat 4974.711 kb on + strandat 4974.712 kb on - strandat 4974.712 kb on - strandat 4974.725 kb on + strandat 4974.726 kb on - strandat 4974.753 kb on + strandat 4974.753 kb on + strandat 4974.754 kb on - strandat 4974.754 kb on - strandat 4974.754 kb on - strandat 4974.754 kb on - strandat 4974.754 kb on - strandat 4974.754 kb on - strandat 4974.925 kb on + strand, within AO356_22235at 4974.926 kb on - strand, within AO356_22235at 4974.926 kb on - strand, within AO356_22235at 4974.965 kb on + strand, within AO356_22235at 4974.965 kb on + strand, within AO356_22235at 4974.965 kb on + strand, within AO356_22235at 4974.965 kb on + strand, within AO356_22235at 4974.965 kb on + strand, within AO356_22235at 4974.965 kb on + strand, within AO356_22235at 4974.966 kb on - strand, within AO356_22235at 4974.966 kb on - strand, within AO356_22235at 4975.096 kb on + strand, within AO356_22235at 4975.097 kb on - strand, within AO356_22235at 4975.308 kb on + strand, within AO356_22240at 4975.308 kb on + strand, within AO356_22240at 4975.308 kb on + strand, within AO356_22240at 4975.309 kb on - strand, within AO356_22240at 4975.309 kb on - strand, within AO356_22240at 4975.365 kb on + strand, within AO356_22240at 4975.366 kb on - strand, within AO356_22240at 4975.449 kb on + strand, within AO356_22240at 4975.450 kb on - strand, within AO356_22240at 4975.450 kb on - strand, within AO356_22240at 4975.467 kb on + strandat 4975.468 kb on - strandat 4975.468 kb on - strandat 4975.468 kb on - strandat 4975.566 kb on + strandat 4975.597 kb on + strandat 4975.598 kb on - strandat 4975.598 kb on - strandat 4975.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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4,974,657 - -1.1
4,974,700 - +0.8
4,974,711 + -1.3
4,974,711 + -0.2
4,974,711 + +0.3
4,974,712 - -0.2
4,974,712 - +0.9
4,974,725 + -0.4
4,974,726 - +0.3
4,974,753 + -0.3
4,974,753 + -0.2
4,974,754 - -0.2
4,974,754 - -0.2
4,974,754 - +1.0
4,974,754 - +0.0
4,974,754 - +0.2
4,974,754 - -0.3
4,974,925 + AO356_22235 0.10 -0.4
4,974,926 - AO356_22235 0.10 -0.3
4,974,926 - AO356_22235 0.10 -0.5
4,974,965 + AO356_22235 0.22 -1.1
4,974,965 + AO356_22235 0.22 -1.2
4,974,965 + AO356_22235 0.22 -0.7
4,974,965 + AO356_22235 0.22 -0.1
4,974,965 + AO356_22235 0.22 -0.3
4,974,965 + AO356_22235 0.22 +1.0
4,974,966 - AO356_22235 0.22 +0.2
4,974,966 - AO356_22235 0.22 -0.4
4,975,096 + AO356_22235 0.61 -0.2
4,975,097 - AO356_22235 0.61 +0.2
4,975,308 + AO356_22240 0.30 -0.6
4,975,308 + AO356_22240 0.30 -0.4
4,975,308 + AO356_22240 0.30 -0.2
4,975,309 - AO356_22240 0.31 +0.5
4,975,309 - AO356_22240 0.31 -0.5
4,975,365 + AO356_22240 0.52 -0.3
4,975,366 - AO356_22240 0.52 +0.9
4,975,449 + AO356_22240 0.84 -0.2
4,975,450 - AO356_22240 0.85 +0.5
4,975,450 - AO356_22240 0.85 -0.5
4,975,467 + -0.0
4,975,468 - +0.8
4,975,468 - -0.4
4,975,468 - -0.4
4,975,566 + -0.2
4,975,597 + -0.2
4,975,598 - -0.4
4,975,598 - -1.5
4,975,598 - +1.0

Or see this region's nucleotide sequence