Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07980

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07975 and AO356_07980 are separated by 11 nucleotidesAO356_07980 and AO356_07985 overlap by 1 nucleotides AO356_07975: AO356_07975 - ABC transporter, at 1,787,031 to 1,788,584 _07975 AO356_07980: AO356_07980 - sugar ABC transporter permease, at 1,788,596 to 1,789,702 _07980 AO356_07985: AO356_07985 - ABC transporter permease, at 1,789,702 to 1,790,628 _07985 Position (kb) 1788 1789 1790Strain fitness (log2 ratio) -2 -1 0 1 2at 1787.621 kb on + strand, within AO356_07975at 1787.621 kb on + strand, within AO356_07975at 1787.622 kb on - strand, within AO356_07975at 1787.775 kb on + strand, within AO356_07975at 1787.816 kb on + strand, within AO356_07975at 1787.816 kb on + strand, within AO356_07975at 1787.816 kb on + strand, within AO356_07975at 1787.816 kb on + strand, within AO356_07975at 1787.816 kb on + strand, within AO356_07975at 1787.816 kb on + strand, within AO356_07975at 1787.816 kb on + strand, within AO356_07975at 1787.816 kb on + strand, within AO356_07975at 1787.816 kb on + strand, within AO356_07975at 1788.214 kb on + strand, within AO356_07975at 1788.580 kb on + strandat 1788.658 kb on - strandat 1788.734 kb on + strand, within AO356_07980at 1788.734 kb on + strand, within AO356_07980at 1788.734 kb on + strand, within AO356_07980at 1788.734 kb on + strand, within AO356_07980at 1788.735 kb on - strand, within AO356_07980at 1788.735 kb on - strand, within AO356_07980at 1788.735 kb on - strand, within AO356_07980at 1788.735 kb on - strand, within AO356_07980at 1788.735 kb on - strand, within AO356_07980at 1788.836 kb on + strand, within AO356_07980at 1789.058 kb on + strand, within AO356_07980at 1789.058 kb on + strand, within AO356_07980at 1789.058 kb on + strand, within AO356_07980at 1789.058 kb on + strand, within AO356_07980at 1789.058 kb on + strand, within AO356_07980at 1789.058 kb on + strand, within AO356_07980at 1789.059 kb on - strand, within AO356_07980at 1789.059 kb on - strand, within AO356_07980at 1789.059 kb on - strand, within AO356_07980at 1789.202 kb on + strand, within AO356_07980at 1789.202 kb on + strand, within AO356_07980at 1789.203 kb on - strand, within AO356_07980at 1789.203 kb on - strand, within AO356_07980at 1789.203 kb on - strand, within AO356_07980at 1789.203 kb on - strand, within AO356_07980at 1789.440 kb on - strand, within AO356_07980at 1789.440 kb on - strand, within AO356_07980at 1789.450 kb on + strand, within AO356_07980at 1789.521 kb on - strand, within AO356_07980at 1789.521 kb on - strand, within AO356_07980at 1789.521 kb on - strand, within AO356_07980at 1789.521 kb on - strand, within AO356_07980at 1789.521 kb on - strand, within AO356_07980at 1789.726 kb on - strandat 1789.726 kb on - strandat 1789.732 kb on + strandat 1790.074 kb on - strand, within AO356_07985at 1790.102 kb on + strand, within AO356_07985at 1790.103 kb on - strand, within AO356_07985at 1790.103 kb on - strand, within AO356_07985at 1790.137 kb on + strand, within AO356_07985at 1790.137 kb on + strand, within AO356_07985at 1790.137 kb on + strand, within AO356_07985at 1790.138 kb on - strand, within AO356_07985at 1790.138 kb on - strand, within AO356_07985at 1790.138 kb on - strand, within AO356_07985at 1790.317 kb on + strand, within AO356_07985at 1790.317 kb on + strand, within AO356_07985at 1790.317 kb on + strand, within AO356_07985at 1790.318 kb on - strand, within AO356_07985at 1790.318 kb on - strand, within AO356_07985at 1790.318 kb on - strand, within AO356_07985at 1790.397 kb on - strand, within AO356_07985at 1790.437 kb on + strand, within AO356_07985at 1790.437 kb on + strand, within AO356_07985at 1790.438 kb on - strand, within AO356_07985at 1790.540 kb on + strandat 1790.540 kb on + strandat 1790.540 kb on + strandat 1790.541 kb on - strandat 1790.541 kb on - strandat 1790.541 kb on - strandat 1790.541 kb on - strandat 1790.541 kb on - strandat 1790.541 kb on - strandat 1790.584 kb on + strandat 1790.631 kb on + strandat 1790.632 kb on - strandat 1790.647 kb on + strandat 1790.647 kb on + strandat 1790.648 kb on - strandat 1790.648 kb on - strandat 1790.673 kb on + strandat 1790.674 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,787,621 + AO356_07975 0.38 -0.1
1,787,621 + AO356_07975 0.38 +0.1
1,787,622 - AO356_07975 0.38 +0.3
1,787,775 + AO356_07975 0.48 +0.6
1,787,816 + AO356_07975 0.51 -0.4
1,787,816 + AO356_07975 0.51 -0.3
1,787,816 + AO356_07975 0.51 +0.2
1,787,816 + AO356_07975 0.51 -0.1
1,787,816 + AO356_07975 0.51 +0.4
1,787,816 + AO356_07975 0.51 +0.4
1,787,816 + AO356_07975 0.51 -0.0
1,787,816 + AO356_07975 0.51 +0.3
1,787,816 + AO356_07975 0.51 -0.0
1,788,214 + AO356_07975 0.76 -0.5
1,788,580 + +1.8
1,788,658 - +0.3
1,788,734 + AO356_07980 0.12 -0.2
1,788,734 + AO356_07980 0.12 +0.5
1,788,734 + AO356_07980 0.12 -0.2
1,788,734 + AO356_07980 0.12 +0.8
1,788,735 - AO356_07980 0.13 +0.2
1,788,735 - AO356_07980 0.13 +1.4
1,788,735 - AO356_07980 0.13 -0.2
1,788,735 - AO356_07980 0.13 -0.4
1,788,735 - AO356_07980 0.13 +0.2
1,788,836 + AO356_07980 0.22 -0.0
1,789,058 + AO356_07980 0.42 -0.6
1,789,058 + AO356_07980 0.42 +0.7
1,789,058 + AO356_07980 0.42 -0.6
1,789,058 + AO356_07980 0.42 -0.1
1,789,058 + AO356_07980 0.42 -0.6
1,789,058 + AO356_07980 0.42 +1.0
1,789,059 - AO356_07980 0.42 +1.0
1,789,059 - AO356_07980 0.42 +0.5
1,789,059 - AO356_07980 0.42 +0.2
1,789,202 + AO356_07980 0.55 +0.6
1,789,202 + AO356_07980 0.55 -1.5
1,789,203 - AO356_07980 0.55 +0.2
1,789,203 - AO356_07980 0.55 +1.1
1,789,203 - AO356_07980 0.55 +0.1
1,789,203 - AO356_07980 0.55 -0.4
1,789,440 - AO356_07980 0.76 +0.3
1,789,440 - AO356_07980 0.76 +0.4
1,789,450 + AO356_07980 0.77 -0.6
1,789,521 - AO356_07980 0.84 -1.0
1,789,521 - AO356_07980 0.84 +0.6
1,789,521 - AO356_07980 0.84 -0.3
1,789,521 - AO356_07980 0.84 +0.2
1,789,521 - AO356_07980 0.84 +0.6
1,789,726 - +0.5
1,789,726 - -0.3
1,789,732 + +0.7
1,790,074 - AO356_07985 0.40 +0.7
1,790,102 + AO356_07985 0.43 -1.0
1,790,103 - AO356_07985 0.43 -0.6
1,790,103 - AO356_07985 0.43 +0.2
1,790,137 + AO356_07985 0.47 -0.2
1,790,137 + AO356_07985 0.47 -1.5
1,790,137 + AO356_07985 0.47 -1.5
1,790,138 - AO356_07985 0.47 +1.0
1,790,138 - AO356_07985 0.47 +0.1
1,790,138 - AO356_07985 0.47 -0.1
1,790,317 + AO356_07985 0.66 -0.2
1,790,317 + AO356_07985 0.66 +0.9
1,790,317 + AO356_07985 0.66 -0.1
1,790,318 - AO356_07985 0.66 -0.2
1,790,318 - AO356_07985 0.66 -0.3
1,790,318 - AO356_07985 0.66 +0.5
1,790,397 - AO356_07985 0.75 -0.0
1,790,437 + AO356_07985 0.79 -0.1
1,790,437 + AO356_07985 0.79 +0.6
1,790,438 - AO356_07985 0.79 -1.2
1,790,540 + +0.5
1,790,540 + -0.3
1,790,540 + +0.0
1,790,541 - -1.0
1,790,541 - -0.8
1,790,541 - +0.6
1,790,541 - +0.2
1,790,541 - -2.2
1,790,541 - +0.4
1,790,584 + +1.0
1,790,631 + -1.0
1,790,632 - +1.2
1,790,647 + +0.7
1,790,647 + +0.9
1,790,648 - -0.3
1,790,648 - +0.2
1,790,673 + +0.9
1,790,674 - +0.1

Or see this region's nucleotide sequence