Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06185

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06180 and ABIE51_RS06185 are separated by 1 nucleotidesABIE51_RS06185 and ABIE51_RS06190 are separated by 1 nucleotides ABIE51_RS06180: ABIE51_RS06180 - amidophosphoribosyltransferase, at 1,322,031 to 1,323,497 _RS06180 ABIE51_RS06185: ABIE51_RS06185 - ribonuclease E inhibitor RraB, at 1,323,499 to 1,323,855 _RS06185 ABIE51_RS06190: ABIE51_RS06190 - ferritin-like domain-containing protein, at 1,323,857 to 1,324,663 _RS06190 Position (kb) 1323 1324Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1322.631 kb on + strand, within ABIE51_RS06180at 1322.632 kb on - strand, within ABIE51_RS06180at 1322.632 kb on - strand, within ABIE51_RS06180at 1322.787 kb on + strand, within ABIE51_RS06180at 1322.787 kb on + strand, within ABIE51_RS06180at 1322.787 kb on + strand, within ABIE51_RS06180at 1322.787 kb on + strand, within ABIE51_RS06180at 1322.793 kb on + strand, within ABIE51_RS06180at 1322.793 kb on + strand, within ABIE51_RS06180at 1322.794 kb on - strand, within ABIE51_RS06180at 1323.007 kb on - strand, within ABIE51_RS06180at 1323.007 kb on - strand, within ABIE51_RS06180at 1323.192 kb on + strand, within ABIE51_RS06180at 1323.192 kb on + strand, within ABIE51_RS06180at 1323.192 kb on + strand, within ABIE51_RS06180at 1323.193 kb on - strand, within ABIE51_RS06180at 1323.193 kb on - strand, within ABIE51_RS06180at 1323.193 kb on - strand, within ABIE51_RS06180at 1323.328 kb on - strand, within ABIE51_RS06180at 1323.328 kb on - strand, within ABIE51_RS06180at 1323.328 kb on - strand, within ABIE51_RS06180at 1323.414 kb on + strandat 1323.415 kb on - strandat 1324.184 kb on + strand, within ABIE51_RS06190at 1324.184 kb on + strand, within ABIE51_RS06190at 1324.184 kb on + strand, within ABIE51_RS06190at 1324.185 kb on - strand, within ABIE51_RS06190at 1324.185 kb on - strand, within ABIE51_RS06190at 1324.268 kb on + strand, within ABIE51_RS06190at 1324.268 kb on + strand, within ABIE51_RS06190at 1324.269 kb on - strand, within ABIE51_RS06190at 1324.269 kb on - strand, within ABIE51_RS06190at 1324.505 kb on + strand, within ABIE51_RS06190at 1324.505 kb on + strand, within ABIE51_RS06190at 1324.563 kb on - strand, within ABIE51_RS06190at 1324.563 kb on - strand, within ABIE51_RS06190at 1324.580 kb on + strand, within ABIE51_RS06190at 1324.580 kb on + strand, within ABIE51_RS06190at 1324.581 kb on - strand, within ABIE51_RS06190at 1324.662 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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1,322,631 + ABIE51_RS06180 0.41 -2.9
1,322,632 - ABIE51_RS06180 0.41 -3.4
1,322,632 - ABIE51_RS06180 0.41 -1.1
1,322,787 + ABIE51_RS06180 0.52 -3.2
1,322,787 + ABIE51_RS06180 0.52 -2.4
1,322,787 + ABIE51_RS06180 0.52 -2.6
1,322,787 + ABIE51_RS06180 0.52 -1.7
1,322,793 + ABIE51_RS06180 0.52 -2.3
1,322,793 + ABIE51_RS06180 0.52 -0.7
1,322,794 - ABIE51_RS06180 0.52 -2.3
1,323,007 - ABIE51_RS06180 0.67 -3.1
1,323,007 - ABIE51_RS06180 0.67 -1.1
1,323,192 + ABIE51_RS06180 0.79 -2.6
1,323,192 + ABIE51_RS06180 0.79 -1.4
1,323,192 + ABIE51_RS06180 0.79 -3.8
1,323,193 - ABIE51_RS06180 0.79 -1.7
1,323,193 - ABIE51_RS06180 0.79 -1.7
1,323,193 - ABIE51_RS06180 0.79 -1.1
1,323,328 - ABIE51_RS06180 0.88 -2.8
1,323,328 - ABIE51_RS06180 0.88 -4.1
1,323,328 - ABIE51_RS06180 0.88 -2.8
1,323,414 + -4.4
1,323,415 - -3.0
1,324,184 + ABIE51_RS06190 0.41 +0.7
1,324,184 + ABIE51_RS06190 0.41 +0.6
1,324,184 + ABIE51_RS06190 0.41 +0.9
1,324,185 - ABIE51_RS06190 0.41 +0.5
1,324,185 - ABIE51_RS06190 0.41 +0.1
1,324,268 + ABIE51_RS06190 0.51 +0.3
1,324,268 + ABIE51_RS06190 0.51 +0.2
1,324,269 - ABIE51_RS06190 0.51 +0.3
1,324,269 - ABIE51_RS06190 0.51 +0.8
1,324,505 + ABIE51_RS06190 0.80 -1.4
1,324,505 + ABIE51_RS06190 0.80 -0.3
1,324,563 - ABIE51_RS06190 0.87 +0.3
1,324,563 - ABIE51_RS06190 0.87 +0.7
1,324,580 + ABIE51_RS06190 0.90 +0.7
1,324,580 + ABIE51_RS06190 0.90 +1.3
1,324,581 - ABIE51_RS06190 0.90 -0.0
1,324,662 - -0.3

Or see this region's nucleotide sequence