Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02415 and ABIE51_RS02420 are separated by 211 nucleotides ABIE51_RS02420 and ABIE51_RS02425 are separated by 81 nucleotides ABIE51_RS02425 and ABIE51_RS02430 are separated by 77 nucleotides ABIE51_RS02430 and ABIE51_RS02435 are separated by 101 nucleotides ABIE51_RS02435 and ABIE51_RS02440 overlap by 4 nucleotides
ABIE51_RS02415: ABIE51_RS02415 - M20/M25/M40 family metallo-hydrolase, at 538,284 to 539,705
_RS02415
ABIE51_RS02420: ABIE51_RS02420 - hypothetical protein, at 539,917 to 540,141
_RS02420
ABIE51_RS02425: ABIE51_RS02425 - VOC family protein, at 540,223 to 540,603
_RS02425
ABIE51_RS02430: ABIE51_RS02430 - LysR family transcriptional regulator, at 540,681 to 541,592
_RS02430
ABIE51_RS02435: ABIE51_RS02435 - nuclear transport factor 2 family protein, at 541,694 to 542,023
_RS02435
ABIE51_RS02440: ABIE51_RS02440 - SDR family oxidoreductase, at 542,020 to 542,802
_RS02440
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1
2 at 539.790 kb on + strand at 539.790 kb on + strand at 539.790 kb on + strand at 539.791 kb on - strand at 539.791 kb on - strand at 539.791 kb on - strand at 539.844 kb on - strand at 539.864 kb on - strand at 539.888 kb on + strand at 539.888 kb on + strand at 539.889 kb on - strand at 539.889 kb on - strand at 539.923 kb on + strand at 539.923 kb on + strand at 539.923 kb on + strand at 539.923 kb on + strand at 539.923 kb on + strand at 539.924 kb on - strand at 539.924 kb on - strand at 539.924 kb on - strand at 539.978 kb on - strand, within ABIE51_RS02420 at 540.016 kb on + strand, within ABIE51_RS02420 at 540.016 kb on + strand, within ABIE51_RS02420 at 540.016 kb on + strand, within ABIE51_RS02420 at 540.016 kb on + strand, within ABIE51_RS02420 at 540.016 kb on + strand, within ABIE51_RS02420 at 540.016 kb on + strand, within ABIE51_RS02420 at 540.017 kb on - strand, within ABIE51_RS02420 at 540.017 kb on - strand, within ABIE51_RS02420 at 540.043 kb on + strand, within ABIE51_RS02420 at 540.043 kb on + strand, within ABIE51_RS02420 at 540.094 kb on + strand, within ABIE51_RS02420 at 540.094 kb on + strand, within ABIE51_RS02420 at 540.095 kb on - strand, within ABIE51_RS02420 at 540.095 kb on - strand, within ABIE51_RS02420 at 540.257 kb on + strand at 540.258 kb on - strand at 540.258 kb on - strand at 540.277 kb on + strand, within ABIE51_RS02425 at 540.277 kb on + strand, within ABIE51_RS02425 at 540.520 kb on + strand, within ABIE51_RS02425 at 540.532 kb on + strand, within ABIE51_RS02425 at 540.532 kb on + strand, within ABIE51_RS02425 at 540.533 kb on - strand, within ABIE51_RS02425 at 540.533 kb on - strand, within ABIE51_RS02425 at 540.533 kb on - strand, within ABIE51_RS02425 at 540.533 kb on - strand, within ABIE51_RS02425 at 540.533 kb on - strand, within ABIE51_RS02425 at 540.616 kb on + strand at 540.699 kb on - strand at 540.763 kb on + strand at 540.763 kb on + strand at 540.764 kb on - strand at 540.766 kb on + strand at 540.766 kb on + strand at 540.766 kb on + strand at 540.772 kb on + strand at 540.772 kb on + strand at 540.772 kb on + strand at 540.773 kb on - strand, within ABIE51_RS02430 at 540.773 kb on - strand, within ABIE51_RS02430 at 540.773 kb on - strand, within ABIE51_RS02430 at 540.859 kb on + strand, within ABIE51_RS02430 at 540.860 kb on - strand, within ABIE51_RS02430 at 540.865 kb on + strand, within ABIE51_RS02430 at 541.608 kb on - strand at 541.627 kb on + strand at 541.627 kb on + strand at 541.628 kb on - strand at 541.628 kb on - strand at 541.628 kb on - strand at 541.730 kb on + strand, within ABIE51_RS02435 at 541.731 kb on - strand, within ABIE51_RS02435 at 541.865 kb on + strand, within ABIE51_RS02435 at 541.865 kb on + strand, within ABIE51_RS02435 at 541.865 kb on + strand, within ABIE51_RS02435 at 541.865 kb on + strand, within ABIE51_RS02435 at 541.866 kb on - strand, within ABIE51_RS02435 at 541.871 kb on + strand, within ABIE51_RS02435 at 541.871 kb on + strand, within ABIE51_RS02435 at 541.872 kb on - strand, within ABIE51_RS02435 at 541.872 kb on - strand, within ABIE51_RS02435 at 541.872 kb on - strand, within ABIE51_RS02435 at 541.872 kb on - strand, within ABIE51_RS02435 at 541.872 kb on - strand, within ABIE51_RS02435 at 541.913 kb on + strand, within ABIE51_RS02435 at 541.914 kb on - strand, within ABIE51_RS02435 at 541.970 kb on + strand, within ABIE51_RS02435 at 541.971 kb on - strand, within ABIE51_RS02435 at 542.079 kb on + strand at 542.176 kb on + strand, within ABIE51_RS02440 at 542.177 kb on - strand, within ABIE51_RS02440 at 542.473 kb on + strand, within ABIE51_RS02440 at 542.474 kb on - strand, within ABIE51_RS02440
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 539,790 + -0.0 539,790 + +0.4 539,790 + +0.3 539,791 - -1.3 539,791 - -0.1 539,791 - -0.4 539,844 - -1.5 539,864 - +0.1 539,888 + -0.1 539,888 + -0.3 539,889 - -0.1 539,889 - +0.7 539,923 + +0.3 539,923 + +0.2 539,923 + +0.0 539,923 + +0.1 539,923 + -0.2 539,924 - +0.6 539,924 - +0.5 539,924 - +0.4 539,978 - ABIE51_RS02420 0.27 -0.4 540,016 + ABIE51_RS02420 0.44 -0.3 540,016 + ABIE51_RS02420 0.44 -0.3 540,016 + ABIE51_RS02420 0.44 -0.0 540,016 + ABIE51_RS02420 0.44 -0.5 540,016 + ABIE51_RS02420 0.44 +0.0 540,016 + ABIE51_RS02420 0.44 +0.1 540,017 - ABIE51_RS02420 0.44 -0.2 540,017 - ABIE51_RS02420 0.44 +0.0 540,043 + ABIE51_RS02420 0.56 +1.1 540,043 + ABIE51_RS02420 0.56 +1.1 540,094 + ABIE51_RS02420 0.79 -0.7 540,094 + ABIE51_RS02420 0.79 +2.4 540,095 - ABIE51_RS02420 0.79 +0.5 540,095 - ABIE51_RS02420 0.79 -0.2 540,257 + +0.6 540,258 - -0.1 540,258 - +1.0 540,277 + ABIE51_RS02425 0.14 -0.1 540,277 + ABIE51_RS02425 0.14 -0.3 540,520 + ABIE51_RS02425 0.78 +0.5 540,532 + ABIE51_RS02425 0.81 +0.4 540,532 + ABIE51_RS02425 0.81 +0.2 540,533 - ABIE51_RS02425 0.81 -0.2 540,533 - ABIE51_RS02425 0.81 +0.6 540,533 - ABIE51_RS02425 0.81 +1.5 540,533 - ABIE51_RS02425 0.81 -0.3 540,533 - ABIE51_RS02425 0.81 +0.3 540,616 + -0.2 540,699 - +0.4 540,763 + +0.7 540,763 + +0.0 540,764 - +0.1 540,766 + -0.3 540,766 + +0.2 540,766 + +2.4 540,772 + -0.0 540,772 + +0.3 540,772 + -0.5 540,773 - ABIE51_RS02430 0.10 -0.1 540,773 - ABIE51_RS02430 0.10 +0.0 540,773 - ABIE51_RS02430 0.10 -0.4 540,859 + ABIE51_RS02430 0.20 -0.1 540,860 - ABIE51_RS02430 0.20 -0.3 540,865 + ABIE51_RS02430 0.20 -0.4 541,608 - -0.2 541,627 + +0.3 541,627 + -0.4 541,628 - +0.0 541,628 - -1.1 541,628 - +1.0 541,730 + ABIE51_RS02435 0.11 +0.3 541,731 - ABIE51_RS02435 0.11 -0.5 541,865 + ABIE51_RS02435 0.52 -0.6 541,865 + ABIE51_RS02435 0.52 +0.4 541,865 + ABIE51_RS02435 0.52 +0.3 541,865 + ABIE51_RS02435 0.52 -0.2 541,866 - ABIE51_RS02435 0.52 +0.6 541,871 + ABIE51_RS02435 0.54 -1.5 541,871 + ABIE51_RS02435 0.54 +0.0 541,872 - ABIE51_RS02435 0.54 -1.5 541,872 - ABIE51_RS02435 0.54 -0.7 541,872 - ABIE51_RS02435 0.54 +0.1 541,872 - ABIE51_RS02435 0.54 -0.3 541,872 - ABIE51_RS02435 0.54 +0.5 541,913 + ABIE51_RS02435 0.66 -1.0 541,914 - ABIE51_RS02435 0.67 -0.1 541,970 + ABIE51_RS02435 0.84 +0.1 541,971 - ABIE51_RS02435 0.84 -2.5 542,079 + +0.8 542,176 + ABIE51_RS02440 0.20 +0.4 542,177 - ABIE51_RS02440 0.20 +1.1 542,473 + ABIE51_RS02440 0.58 -0.4 542,474 - ABIE51_RS02440 0.58 +1.5
Or see this region's nucleotide sequence