Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02778 and SMc02777 are separated by 12 nucleotides SMc02777 and SMc02776 are separated by 167 nucleotides
SMc02778: SMc02778 - hydroxyacid aldolase, at 14,893 to 15,693
SMc02778
SMc02777: SMc02777 - transcriptional regulator, at 15,706 to 16,584
SMc02777
SMc02776: SMc02776 - D-arabinoate dehydratase (EC 4.2.1.5); also involved in L-fucose catabolism <small>(from data)</small>, at 16,752 to 18,257
SMc02776
Position (kb) 15
16
17 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 14.799 kb on + strand at 14.799 kb on + strand at 14.799 kb on + strand at 14.799 kb on + strand at 14.799 kb on + strand at 14.799 kb on + strand at 14.799 kb on + strand at 14.892 kb on + strand at 14.977 kb on + strand, within SMc02778 at 15.301 kb on + strand, within SMc02778 at 15.677 kb on + strand at 15.870 kb on - strand, within SMc02777 at 15.875 kb on + strand, within SMc02777 at 15.875 kb on + strand, within SMc02777 at 15.902 kb on + strand, within SMc02777 at 15.902 kb on + strand, within SMc02777 at 15.903 kb on - strand, within SMc02777 at 16.112 kb on - strand, within SMc02777 at 16.112 kb on - strand, within SMc02777 at 16.367 kb on + strand, within SMc02777 at 16.663 kb on + strand at 16.664 kb on - strand at 16.664 kb on - strand at 16.864 kb on + strand at 17.116 kb on - strand, within SMc02776 at 17.202 kb on + strand, within SMc02776 at 17.203 kb on - strand, within SMc02776 at 17.203 kb on - strand, within SMc02776
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 14,799 + +0.3 14,799 + +0.6 14,799 + +0.9 14,799 + -0.3 14,799 + +0.2 14,799 + +0.6 14,799 + -0.0 14,892 + +0.2 14,977 + SMc02778 0.10 -0.0 15,301 + SMc02778 0.51 -1.1 15,677 + +0.7 15,870 - SMc02777 0.19 +2.1 15,875 + SMc02777 0.19 +1.9 15,875 + SMc02777 0.19 +2.4 15,902 + SMc02777 0.22 +1.6 15,902 + SMc02777 0.22 +2.6 15,903 - SMc02777 0.22 +2.5 16,112 - SMc02777 0.46 +2.4 16,112 - SMc02777 0.46 +2.3 16,367 + SMc02777 0.75 +2.6 16,663 + +1.9 16,664 - -3.5 16,664 - -4.0 16,864 + -2.1 17,116 - SMc02776 0.24 -1.2 17,202 + SMc02776 0.30 -5.9 17,203 - SMc02776 0.30 -1.2 17,203 - SMc02776 0.30 -3.6
Or see this region's nucleotide sequence