Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02776 and SMc02775 are separated by 56 nucleotides SMc02775 and SMc02774 are separated by 108 nucleotides
SMc02776: SMc02776 - D-arabinoate dehydratase (EC 4.2.1.5); also involved in L-fucose catabolism <small>(from data)</small>, at 16,752 to 18,257
SMc02776
SMc02775: SMc02775 - D-arabinose 1-dehydrogenase <small>(from data)</small>, at 18,314 to 19,333
SMc02775
SMc02774: SMc02774 - ABC transporter substrate-binding protein, at 19,442 to 20,431
SMc02774
Position (kb) 18
19
20 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 17.611 kb on + strand, within SMc02776 at 17.661 kb on + strand, within SMc02776 at 17.662 kb on - strand, within SMc02776 at 17.662 kb on - strand, within SMc02776 at 17.731 kb on + strand, within SMc02776 at 17.732 kb on - strand, within SMc02776 at 17.749 kb on - strand, within SMc02776 at 17.749 kb on - strand, within SMc02776 at 17.880 kb on + strand, within SMc02776 at 18.255 kb on + strand at 18.256 kb on - strand at 18.282 kb on + strand at 18.283 kb on - strand at 18.359 kb on + strand at 18.360 kb on - strand at 18.393 kb on - strand at 18.479 kb on + strand, within SMc02775 at 18.480 kb on - strand, within SMc02775 at 18.605 kb on + strand, within SMc02775 at 18.606 kb on - strand, within SMc02775 at 18.611 kb on + strand, within SMc02775 at 18.611 kb on + strand, within SMc02775 at 18.612 kb on - strand, within SMc02775 at 18.641 kb on + strand, within SMc02775 at 18.641 kb on + strand, within SMc02775 at 18.641 kb on + strand, within SMc02775 at 18.641 kb on + strand, within SMc02775 at 18.642 kb on - strand, within SMc02775 at 18.642 kb on - strand, within SMc02775 at 18.642 kb on - strand, within SMc02775 at 18.647 kb on + strand, within SMc02775 at 18.653 kb on + strand, within SMc02775 at 18.687 kb on - strand, within SMc02775 at 18.722 kb on + strand, within SMc02775 at 18.723 kb on - strand, within SMc02775 at 18.773 kb on + strand, within SMc02775 at 18.773 kb on + strand, within SMc02775 at 19.064 kb on + strand, within SMc02775 at 19.114 kb on + strand, within SMc02775 at 19.289 kb on - strand at 19.289 kb on - strand at 19.369 kb on + strand at 19.369 kb on + strand at 19.370 kb on - strand at 19.450 kb on - strand at 19.876 kb on - strand, within SMc02774 at 19.945 kb on + strand, within SMc02774 at 20.016 kb on - strand, within SMc02774 at 20.045 kb on + strand, within SMc02774 at 20.045 kb on + strand, within SMc02774 at 20.045 kb on + strand, within SMc02774 at 20.046 kb on - strand, within SMc02774 at 20.292 kb on - strand, within SMc02774 at 20.292 kb on - strand, within SMc02774 at 20.292 kb on - strand, within SMc02774 at 20.292 kb on - strand, within SMc02774
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 17,611 + SMc02776 0.57 -4.8 17,661 + SMc02776 0.60 -4.8 17,662 - SMc02776 0.60 -3.3 17,662 - SMc02776 0.60 +0.7 17,731 + SMc02776 0.65 -2.8 17,732 - SMc02776 0.65 -2.2 17,749 - SMc02776 0.66 -1.5 17,749 - SMc02776 0.66 -5.3 17,880 + SMc02776 0.75 -3.7 18,255 + -0.3 18,256 - -2.6 18,282 + -0.8 18,283 - -2.5 18,359 + -2.0 18,360 - -2.0 18,393 - -4.3 18,479 + SMc02775 0.16 -4.0 18,480 - SMc02775 0.16 -2.0 18,605 + SMc02775 0.29 -1.0 18,606 - SMc02775 0.29 -2.1 18,611 + SMc02775 0.29 -1.9 18,611 + SMc02775 0.29 -4.4 18,612 - SMc02775 0.29 -1.7 18,641 + SMc02775 0.32 -3.0 18,641 + SMc02775 0.32 -3.0 18,641 + SMc02775 0.32 -1.3 18,641 + SMc02775 0.32 -2.5 18,642 - SMc02775 0.32 -3.9 18,642 - SMc02775 0.32 -2.2 18,642 - SMc02775 0.32 -1.3 18,647 + SMc02775 0.33 -3.4 18,653 + SMc02775 0.33 -2.5 18,687 - SMc02775 0.37 -3.7 18,722 + SMc02775 0.40 +0.9 18,723 - SMc02775 0.40 -1.5 18,773 + SMc02775 0.45 -2.0 18,773 + SMc02775 0.45 -0.9 19,064 + SMc02775 0.74 -2.3 19,114 + SMc02775 0.78 -4.3 19,289 - -0.3 19,289 - -0.5 19,369 + -2.7 19,369 + -0.2 19,370 - -1.0 19,450 - +0.1 19,876 - SMc02774 0.44 -1.0 19,945 + SMc02774 0.51 -0.4 20,016 - SMc02774 0.58 +0.1 20,045 + SMc02774 0.61 -1.1 20,045 + SMc02774 0.61 -1.8 20,045 + SMc02774 0.61 +0.3 20,046 - SMc02774 0.61 +0.6 20,292 - SMc02774 0.86 +1.1 20,292 - SMc02774 0.86 +0.2 20,292 - SMc02774 0.86 -1.5 20,292 - SMc02774 0.86 -0.1
Or see this region's nucleotide sequence