Strain Fitness in Sinorhizobium meliloti 1021 around SMc00697

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00699 and SMc00698 are separated by 226 nucleotidesSMc00698 and SMc00697 are separated by 276 nucleotidesSMc00697 and SMc00696 overlap by 4 nucleotides SMc00699: SMc00699 - hypothetical protein, at 2,880,906 to 2,881,454 SMc00699 SMc00698: SMc00698 - transcriptional regulator, at 2,881,681 to 2,881,962 SMc00698 SMc00697: SMc00697 - hypothetical protein, at 2,882,239 to 2,883,543 SMc00697 SMc00696: SMc00696 - 3-dehydroquinate synthase, at 2,883,540 to 2,884,673 SMc00696 Position (kb) 2882 2883 2884Strain fitness (log2 ratio) -1 0 1at 2881.543 kb on - strandat 2881.809 kb on + strand, within SMc00698at 2881.809 kb on + strand, within SMc00698at 2881.839 kb on + strand, within SMc00698at 2881.840 kb on - strand, within SMc00698at 2881.988 kb on - strandat 2882.217 kb on + strandat 2882.223 kb on + strandat 2882.223 kb on + strandat 2882.223 kb on + strandat 2882.223 kb on + strandat 2882.223 kb on + strandat 2882.223 kb on + strandat 2882.223 kb on + strandat 2882.223 kb on + strandat 2882.223 kb on + strandat 2882.317 kb on - strandat 2882.331 kb on - strandat 2882.497 kb on + strand, within SMc00697at 2882.814 kb on + strand, within SMc00697at 2882.815 kb on - strand, within SMc00697at 2882.815 kb on - strand, within SMc00697at 2883.101 kb on - strand, within SMc00697at 2883.358 kb on + strand, within SMc00697at 2883.358 kb on + strand, within SMc00697at 2883.359 kb on - strand, within SMc00697at 2883.359 kb on - strand, within SMc00697at 2883.409 kb on - strand, within SMc00697at 2883.472 kb on - strandat 2883.510 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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2,881,543 - -0.6
2,881,809 + SMc00698 0.45 +0.7
2,881,809 + SMc00698 0.45 -0.1
2,881,839 + SMc00698 0.56 +0.7
2,881,840 - SMc00698 0.56 -0.1
2,881,988 - -0.1
2,882,217 + -0.6
2,882,223 + +1.3
2,882,223 + -0.2
2,882,223 + -0.4
2,882,223 + -0.1
2,882,223 + -0.1
2,882,223 + -0.4
2,882,223 + +0.1
2,882,223 + +0.3
2,882,223 + +0.0
2,882,317 - -0.4
2,882,331 - -0.1
2,882,497 + SMc00697 0.20 -0.2
2,882,814 + SMc00697 0.44 -0.1
2,882,815 - SMc00697 0.44 -0.4
2,882,815 - SMc00697 0.44 -0.4
2,883,101 - SMc00697 0.66 -0.0
2,883,358 + SMc00697 0.86 -0.3
2,883,358 + SMc00697 0.86 -0.5
2,883,359 - SMc00697 0.86 -1.0
2,883,359 - SMc00697 0.86 -0.5
2,883,409 - SMc00697 0.90 +0.0
2,883,472 - -0.6
2,883,510 - -0.9

Or see this region's nucleotide sequence