Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1283 and SMa1285 are separated by 365 nucleotides SMa1285 and SMa1288 overlap by 4 nucleotides SMa1288 and SMa1289 are separated by 177 nucleotides SMa1289 and SMa1291 overlap by 10 nucleotides
SMa1283: SMa1283 - NnrU family protein, at 700,220 to 700,906
SMa1283
SMa1285: SMa1285 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 701,272 to 701,874
SMa1285
SMa1288: SMa1288 - Carboxylase, at 701,871 to 703,322
SMa1288
SMa1289: SMa1289 - hypothetical protein, at 703,500 to 704,006
SMa1289
SMa1291: SMa1291 - Protease, at 703,997 to 704,974
SMa1291
Position (kb) 701
702
703
704 Strain fitness (log2 ratio) -1
0
1 at 700.904 kb on + strand at 700.904 kb on + strand at 700.904 kb on + strand at 700.905 kb on - strand at 700.905 kb on - strand at 701.104 kb on + strand at 701.273 kb on + strand at 701.273 kb on + strand at 701.274 kb on - strand at 701.274 kb on - strand at 701.408 kb on + strand, within SMa1285 at 701.408 kb on + strand, within SMa1285 at 701.408 kb on + strand, within SMa1285 at 701.408 kb on + strand, within SMa1285 at 701.408 kb on + strand, within SMa1285 at 701.678 kb on + strand, within SMa1285 at 702.046 kb on + strand, within SMa1288 at 702.047 kb on - strand, within SMa1288 at 702.047 kb on - strand, within SMa1288 at 702.165 kb on + strand, within SMa1288 at 702.173 kb on + strand, within SMa1288 at 702.174 kb on - strand, within SMa1288 at 702.174 kb on - strand, within SMa1288 at 702.216 kb on - strand, within SMa1288 at 702.268 kb on + strand, within SMa1288 at 702.292 kb on + strand, within SMa1288 at 702.292 kb on + strand, within SMa1288 at 702.292 kb on + strand, within SMa1288 at 702.292 kb on + strand, within SMa1288 at 702.293 kb on - strand, within SMa1288 at 702.294 kb on + strand, within SMa1288 at 702.294 kb on + strand, within SMa1288 at 702.295 kb on - strand, within SMa1288 at 702.295 kb on - strand, within SMa1288 at 702.406 kb on + strand, within SMa1288 at 702.406 kb on + strand, within SMa1288 at 702.407 kb on - strand, within SMa1288 at 702.407 kb on - strand, within SMa1288 at 702.407 kb on - strand, within SMa1288 at 702.407 kb on - strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.473 kb on - strand, within SMa1288 at 702.473 kb on - strand, within SMa1288 at 702.494 kb on - strand, within SMa1288 at 702.814 kb on + strand, within SMa1288 at 702.814 kb on + strand, within SMa1288 at 703.131 kb on + strand, within SMa1288 at 703.131 kb on + strand at 703.132 kb on - strand, within SMa1288 at 703.132 kb on - strand, within SMa1288 at 703.179 kb on + strand at 703.180 kb on - strand at 703.375 kb on + strand at 703.375 kb on + strand at 703.442 kb on + strand at 703.467 kb on - strand at 703.467 kb on - strand at 703.631 kb on + strand, within SMa1289 at 703.632 kb on - strand, within SMa1289 at 703.632 kb on - strand, within SMa1289 at 703.771 kb on + strand, within SMa1289 at 703.771 kb on + strand, within SMa1289 at 703.846 kb on + strand, within SMa1289 at 703.846 kb on + strand, within SMa1289 at 703.846 kb on + strand, within SMa1289 at 703.847 kb on - strand, within SMa1289 at 703.847 kb on - strand, within SMa1289 at 704.069 kb on + strand at 704.147 kb on - strand, within SMa1291 at 704.154 kb on - strand, within SMa1291 at 704.229 kb on - strand, within SMa1291 at 704.293 kb on + strand, within SMa1291 at 704.294 kb on - strand, within SMa1291 at 704.316 kb on - strand, within SMa1291
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 700,904 + +0.1 700,904 + +0.8 700,904 + -0.2 700,905 - +0.0 700,905 - -0.5 701,104 + -0.3 701,273 + -0.5 701,273 + -0.3 701,274 - +0.4 701,274 - -0.3 701,408 + SMa1285 0.23 -1.2 701,408 + SMa1285 0.23 +1.1 701,408 + SMa1285 0.23 +0.2 701,408 + SMa1285 0.23 +0.4 701,408 + SMa1285 0.23 +0.4 701,678 + SMa1285 0.67 -0.1 702,046 + SMa1288 0.12 +1.6 702,047 - SMa1288 0.12 -0.2 702,047 - SMa1288 0.12 +0.2 702,165 + SMa1288 0.20 +0.4 702,173 + SMa1288 0.21 +0.5 702,174 - SMa1288 0.21 -0.1 702,174 - SMa1288 0.21 +0.1 702,216 - SMa1288 0.24 +0.5 702,268 + SMa1288 0.27 -0.2 702,292 + SMa1288 0.29 -0.3 702,292 + SMa1288 0.29 +1.7 702,292 + SMa1288 0.29 -0.3 702,292 + SMa1288 0.29 +0.7 702,293 - SMa1288 0.29 -0.4 702,294 + SMa1288 0.29 +0.8 702,294 + SMa1288 0.29 +1.3 702,295 - SMa1288 0.29 -0.1 702,295 - SMa1288 0.29 +0.2 702,406 + SMa1288 0.37 +0.9 702,406 + SMa1288 0.37 +0.1 702,407 - SMa1288 0.37 +0.1 702,407 - SMa1288 0.37 -1.0 702,407 - SMa1288 0.37 -1.2 702,407 - SMa1288 0.37 -0.0 702,472 + SMa1288 0.41 +1.4 702,472 + SMa1288 0.41 +0.4 702,472 + SMa1288 0.41 +0.4 702,472 + SMa1288 0.41 -0.1 702,472 + SMa1288 0.41 +0.6 702,472 + SMa1288 0.41 +0.1 702,473 - SMa1288 0.41 -0.3 702,473 - SMa1288 0.41 -0.5 702,494 - SMa1288 0.43 -0.1 702,814 + SMa1288 0.65 -0.2 702,814 + SMa1288 0.65 +0.1 703,131 + SMa1288 0.87 +0.1 703,131 + -0.2 703,132 - SMa1288 0.87 -0.3 703,132 - SMa1288 0.87 +0.0 703,179 + +0.1 703,180 - +0.1 703,375 + +0.2 703,375 + +0.5 703,442 + +0.5 703,467 - -0.7 703,467 - -1.6 703,631 + SMa1289 0.26 +0.2 703,632 - SMa1289 0.26 +0.5 703,632 - SMa1289 0.26 +0.1 703,771 + SMa1289 0.53 +0.3 703,771 + SMa1289 0.53 -0.1 703,846 + SMa1289 0.68 -0.1 703,846 + SMa1289 0.68 -1.5 703,846 + SMa1289 0.68 +0.2 703,847 - SMa1289 0.68 -0.7 703,847 - SMa1289 0.68 +0.3 704,069 + -0.1 704,147 - SMa1291 0.15 -0.0 704,154 - SMa1291 0.16 -0.1 704,229 - SMa1291 0.24 -0.3 704,293 + SMa1291 0.30 -0.7 704,294 - SMa1291 0.30 +0.6 704,316 - SMa1291 0.33 -0.5
Or see this region's nucleotide sequence