Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0244 and SMa0246 are separated by 14 nucleotides SMa0246 and SMa0247 are separated by 170 nucleotides SMa0247 and SMa0249 are separated by 0 nucleotides SMa0249 and SMa0250 overlap by 1 nucleotides
SMa0244: SMa0244 - Dehydrogenase, FAD-dependent, at 134,949 to 136,394
SMa0244
SMa0246: SMa0246 - GntR family transcriptional regulator, at 136,409 to 137,119
SMa0246
SMa0247: SMa0247 - 2-dehydro-3-deoxy-D-arabinonate dehydratase, 2,4-dioxopentanoate forming <small>(from data)</small>, at 137,290 to 138,486
SMa0247
SMa0249: SMa0249 - TRAP-type small permease component, at 138,487 to 139,020
SMa0249
SMa0250: SMa0250 - dedA-like protein, at 139,020 to 140,297
SMa0250
Position (kb) 137
138
139 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 136.502 kb on - strand, within SMa0246 at 136.582 kb on + strand, within SMa0246 at 136.584 kb on + strand, within SMa0246 at 136.584 kb on + strand, within SMa0246 at 136.584 kb on + strand, within SMa0246 at 136.584 kb on + strand, within SMa0246 at 136.584 kb on + strand, within SMa0246 at 136.584 kb on + strand, within SMa0246 at 136.584 kb on + strand, within SMa0246 at 136.729 kb on + strand, within SMa0246 at 136.729 kb on + strand, within SMa0246 at 136.774 kb on + strand, within SMa0246 at 136.774 kb on + strand, within SMa0246 at 136.775 kb on - strand, within SMa0246 at 136.775 kb on - strand, within SMa0246 at 136.904 kb on + strand, within SMa0246 at 136.977 kb on + strand, within SMa0246 at 137.117 kb on + strand at 137.188 kb on - strand at 137.192 kb on - strand at 137.202 kb on + strand at 137.202 kb on + strand at 137.884 kb on + strand, within SMa0247 at 137.884 kb on + strand, within SMa0247 at 137.884 kb on + strand, within SMa0247 at 137.884 kb on + strand, within SMa0247 at 137.884 kb on + strand, within SMa0247 at 137.884 kb on + strand, within SMa0247 at 137.884 kb on + strand, within SMa0247 at 137.885 kb on - strand, within SMa0247 at 137.885 kb on - strand, within SMa0247 at 137.885 kb on - strand, within SMa0247 at 137.886 kb on + strand, within SMa0247 at 138.048 kb on + strand, within SMa0247 at 138.049 kb on - strand at 138.049 kb on - strand, within SMa0247 at 138.049 kb on - strand, within SMa0247 at 138.484 kb on + strand at 138.484 kb on + strand at 138.485 kb on - strand at 138.485 kb on - strand at 138.485 kb on - strand at 138.511 kb on + strand at 138.512 kb on - strand at 138.634 kb on + strand, within SMa0249 at 138.883 kb on + strand, within SMa0249 at 138.884 kb on - strand, within SMa0249 at 139.018 kb on + strand at 139.018 kb on + strand at 139.019 kb on - strand at 139.120 kb on - strand at 139.136 kb on + strand at 139.256 kb on - strand, within SMa0250 at 139.283 kb on + strand, within SMa0250 at 139.284 kb on - strand, within SMa0250 at 139.285 kb on + strand, within SMa0250 at 139.337 kb on + strand, within SMa0250 at 139.338 kb on - strand, within SMa0250 at 139.338 kb on - strand, within SMa0250 at 139.338 kb on - strand, within SMa0250
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 136,502 - SMa0246 0.13 -1.2 136,582 + SMa0246 0.24 +1.5 136,584 + SMa0246 0.25 +1.8 136,584 + SMa0246 0.25 +0.8 136,584 + SMa0246 0.25 +0.8 136,584 + SMa0246 0.25 +0.6 136,584 + SMa0246 0.25 +1.3 136,584 + SMa0246 0.25 +1.2 136,584 + SMa0246 0.25 +0.8 136,729 + SMa0246 0.45 +1.2 136,729 + SMa0246 0.45 +2.7 136,774 + SMa0246 0.51 +1.0 136,774 + SMa0246 0.51 +1.4 136,775 - SMa0246 0.51 -0.3 136,775 - SMa0246 0.51 -0.2 136,904 + SMa0246 0.70 +0.9 136,977 + SMa0246 0.80 +1.6 137,117 + +2.0 137,188 - +0.3 137,192 - +0.1 137,202 + +1.2 137,202 + +1.1 137,884 + SMa0247 0.50 -3.1 137,884 + SMa0247 0.50 -5.0 137,884 + SMa0247 0.50 -3.2 137,884 + SMa0247 0.50 -4.5 137,884 + SMa0247 0.50 -6.3 137,884 + SMa0247 0.50 -2.8 137,884 + SMa0247 0.50 +1.3 137,885 - SMa0247 0.50 -4.9 137,885 - SMa0247 0.50 -4.6 137,885 - SMa0247 0.50 -2.5 137,886 + SMa0247 0.50 -2.8 138,048 + SMa0247 0.63 -5.3 138,049 - -0.9 138,049 - SMa0247 0.63 -2.6 138,049 - SMa0247 0.63 -2.9 138,484 + -1.8 138,484 + -2.2 138,485 - -0.5 138,485 - -0.7 138,485 - -0.8 138,511 + -5.5 138,512 - -1.2 138,634 + SMa0249 0.28 -0.6 138,883 + SMa0249 0.74 -0.4 138,884 - SMa0249 0.74 -1.2 139,018 + -0.2 139,018 + -0.7 139,019 - -0.4 139,120 - +0.2 139,136 + +1.5 139,256 - SMa0250 0.18 +0.9 139,283 + SMa0250 0.21 +0.4 139,284 - SMa0250 0.21 -0.5 139,285 + SMa0250 0.21 -0.4 139,337 + SMa0250 0.25 -0.3 139,338 - SMa0250 0.25 -0.1 139,338 - SMa0250 0.25 +1.5 139,338 - SMa0250 0.25 +0.5
Or see this region's nucleotide sequence