Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21604 and SM_b21605 are separated by 86 nucleotides SM_b21605 and SM_b20924 are separated by 61 nucleotides
SM_b21604: SM_b21604 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,144,862 to 1,146,124
_b21604
SM_b21605: SM_b21605 - sugar uptake ABC transporter ATP-binding protein, at 1,146,211 to 1,147,299
_b21605
SM_b20924: SM_b20924 - alpha-L-arabinofuranosidase, at 1,147,361 to 1,148,881
_b20924
Position (kb)
1146
1147
1148 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1145.385 kb on + strand, within SM_b21604 at 1145.386 kb on - strand, within SM_b21604 at 1145.391 kb on - strand, within SM_b21604 at 1145.406 kb on + strand, within SM_b21604 at 1145.517 kb on + strand, within SM_b21604 at 1145.518 kb on - strand, within SM_b21604 at 1145.518 kb on - strand, within SM_b21604 at 1145.518 kb on - strand, within SM_b21604 at 1145.518 kb on - strand, within SM_b21604 at 1145.689 kb on + strand, within SM_b21604 at 1145.690 kb on - strand, within SM_b21604 at 1145.690 kb on - strand, within SM_b21604 at 1145.690 kb on - strand, within SM_b21604 at 1145.691 kb on + strand, within SM_b21604 at 1145.692 kb on - strand, within SM_b21604 at 1145.692 kb on - strand, within SM_b21604 at 1145.692 kb on - strand, within SM_b21604 at 1145.694 kb on + strand, within SM_b21604 at 1145.730 kb on + strand, within SM_b21604 at 1145.731 kb on - strand, within SM_b21604 at 1145.731 kb on - strand, within SM_b21604 at 1145.731 kb on - strand, within SM_b21604 at 1145.731 kb on - strand, within SM_b21604 at 1145.770 kb on - strand, within SM_b21604 at 1145.770 kb on - strand, within SM_b21604 at 1145.865 kb on + strand, within SM_b21604 at 1145.865 kb on + strand, within SM_b21604 at 1145.865 kb on + strand, within SM_b21604 at 1145.866 kb on - strand, within SM_b21604 at 1145.866 kb on - strand, within SM_b21604 at 1145.866 kb on - strand, within SM_b21604 at 1145.866 kb on - strand, within SM_b21604 at 1145.866 kb on - strand, within SM_b21604 at 1145.920 kb on - strand, within SM_b21604 at 1145.920 kb on - strand, within SM_b21604 at 1145.920 kb on - strand, within SM_b21604 at 1146.043 kb on + strand at 1146.044 kb on - strand at 1146.044 kb on - strand at 1146.114 kb on - strand at 1146.318 kb on + strand at 1146.734 kb on + strand, within SM_b21605 at 1146.734 kb on + strand, within SM_b21605 at 1146.734 kb on + strand, within SM_b21605 at 1146.734 kb on + strand, within SM_b21605 at 1146.734 kb on + strand, within SM_b21605 at 1146.734 kb on + strand, within SM_b21605 at 1146.734 kb on + strand, within SM_b21605 at 1146.734 kb on + strand, within SM_b21605 at 1146.735 kb on - strand, within SM_b21605 at 1146.735 kb on - strand, within SM_b21605 at 1146.735 kb on - strand, within SM_b21605 at 1146.735 kb on - strand, within SM_b21605 at 1146.735 kb on - strand, within SM_b21605 at 1146.923 kb on + strand, within SM_b21605 at 1146.924 kb on - strand, within SM_b21605 at 1147.024 kb on + strand, within SM_b21605 at 1147.024 kb on + strand, within SM_b21605 at 1147.041 kb on - strand, within SM_b21605 at 1147.049 kb on + strand, within SM_b21605 at 1147.050 kb on - strand, within SM_b21605 at 1147.050 kb on - strand, within SM_b21605 at 1147.050 kb on - strand, within SM_b21605 at 1147.222 kb on + strand at 1147.222 kb on + strand at 1147.223 kb on - strand at 1147.228 kb on + strand at 1147.228 kb on + strand at 1147.229 kb on - strand at 1147.229 kb on - strand at 1147.230 kb on + strand at 1147.230 kb on + strand at 1147.230 kb on + strand at 1147.362 kb on + strand at 1147.362 kb on + strand at 1147.362 kb on + strand at 1147.363 kb on - strand at 1147.395 kb on + strand at 1147.662 kb on + strand, within SM_b20924 at 1147.662 kb on + strand, within SM_b20924 at 1147.663 kb on - strand, within SM_b20924 at 1147.663 kb on - strand, within SM_b20924 at 1147.667 kb on + strand, within SM_b20924 at 1147.668 kb on - strand, within SM_b20924 at 1147.693 kb on - strand, within SM_b20924 at 1147.737 kb on + strand, within SM_b20924 at 1147.738 kb on - strand, within SM_b20924 at 1147.749 kb on + strand, within SM_b20924 at 1147.749 kb on + strand, within SM_b20924 at 1147.749 kb on + strand, within SM_b20924 at 1147.750 kb on - strand, within SM_b20924 at 1147.750 kb on - strand, within SM_b20924 at 1147.762 kb on - strand, within SM_b20924 at 1147.762 kb on - strand, within SM_b20924 at 1147.764 kb on + strand, within SM_b20924 at 1147.765 kb on - strand, within SM_b20924 at 1147.765 kb on - strand, within SM_b20924 at 1147.917 kb on + strand, within SM_b20924 at 1147.917 kb on + strand, within SM_b20924 at 1147.918 kb on - strand, within SM_b20924 at 1148.061 kb on + strand, within SM_b20924 at 1148.062 kb on - strand, within SM_b20924 at 1148.091 kb on + strand, within SM_b20924 at 1148.091 kb on + strand, within SM_b20924 at 1148.118 kb on + strand, within SM_b20924 at 1148.119 kb on - strand, within SM_b20924 at 1148.121 kb on + strand, within SM_b20924 at 1148.121 kb on + strand, within SM_b20924 at 1148.122 kb on - strand, within SM_b20924 at 1148.122 kb on - strand, within SM_b20924 at 1148.122 kb on - strand, within SM_b20924 at 1148.122 kb on - strand, within SM_b20924 at 1148.122 kb on - strand, within SM_b20924 at 1148.154 kb on + strand, within SM_b20924 at 1148.173 kb on - strand, within SM_b20924 at 1148.173 kb on - strand, within SM_b20924 at 1148.173 kb on - strand, within SM_b20924 at 1148.187 kb on + strand, within SM_b20924 at 1148.188 kb on - strand, within SM_b20924 at 1148.224 kb on - strand, within SM_b20924 at 1148.283 kb on + strand, within SM_b20924 at 1148.283 kb on + strand, within SM_b20924 at 1148.284 kb on - strand, within SM_b20924
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 1,145,385 + SM_b21604 0.41 -0.2 1,145,386 - SM_b21604 0.41 +0.5 1,145,391 - SM_b21604 0.42 -0.1 1,145,406 + SM_b21604 0.43 +0.2 1,145,517 + SM_b21604 0.52 -0.2 1,145,518 - SM_b21604 0.52 +0.2 1,145,518 - SM_b21604 0.52 +0.2 1,145,518 - SM_b21604 0.52 +0.2 1,145,518 - SM_b21604 0.52 +0.1 1,145,689 + SM_b21604 0.65 -2.8 1,145,690 - SM_b21604 0.66 -0.2 1,145,690 - SM_b21604 0.66 -0.2 1,145,690 - SM_b21604 0.66 -0.2 1,145,691 + SM_b21604 0.66 +0.3 1,145,692 - SM_b21604 0.66 -0.0 1,145,692 - SM_b21604 0.66 +0.0 1,145,692 - SM_b21604 0.66 +0.2 1,145,694 + SM_b21604 0.66 +0.7 1,145,730 + SM_b21604 0.69 -0.7 1,145,731 - SM_b21604 0.69 +0.4 1,145,731 - SM_b21604 0.69 -0.2 1,145,731 - SM_b21604 0.69 -0.2 1,145,731 - SM_b21604 0.69 -0.4 1,145,770 - SM_b21604 0.72 +0.3 1,145,770 - SM_b21604 0.72 -0.5 1,145,865 + SM_b21604 0.79 +0.2 1,145,865 + SM_b21604 0.79 +0.0 1,145,865 + SM_b21604 0.79 +0.0 1,145,866 - SM_b21604 0.79 -0.7 1,145,866 - SM_b21604 0.79 -0.7 1,145,866 - SM_b21604 0.79 -0.1 1,145,866 - SM_b21604 0.79 -0.4 1,145,866 - SM_b21604 0.79 +0.1 1,145,920 - SM_b21604 0.84 +0.0 1,145,920 - SM_b21604 0.84 +1.2 1,145,920 - SM_b21604 0.84 +0.4 1,146,043 + +1.0 1,146,044 - +0.6 1,146,044 - -0.3 1,146,114 - +0.3 1,146,318 + +0.6 1,146,734 + SM_b21605 0.48 +1.0 1,146,734 + SM_b21605 0.48 +0.6 1,146,734 + SM_b21605 0.48 -1.0 1,146,734 + SM_b21605 0.48 +0.4 1,146,734 + SM_b21605 0.48 +0.5 1,146,734 + SM_b21605 0.48 -0.2 1,146,734 + SM_b21605 0.48 +0.4 1,146,734 + SM_b21605 0.48 +0.2 1,146,735 - SM_b21605 0.48 -0.0 1,146,735 - SM_b21605 0.48 -0.1 1,146,735 - SM_b21605 0.48 +0.5 1,146,735 - SM_b21605 0.48 -0.3 1,146,735 - SM_b21605 0.48 +0.9 1,146,923 + SM_b21605 0.65 +0.5 1,146,924 - SM_b21605 0.65 +0.5 1,147,024 + SM_b21605 0.75 +0.0 1,147,024 + SM_b21605 0.75 -0.1 1,147,041 - SM_b21605 0.76 -0.5 1,147,049 + SM_b21605 0.77 -0.1 1,147,050 - SM_b21605 0.77 +0.9 1,147,050 - SM_b21605 0.77 +0.5 1,147,050 - SM_b21605 0.77 -0.3 1,147,222 + +0.1 1,147,222 + -0.6 1,147,223 - -0.6 1,147,228 + +0.1 1,147,228 + +0.3 1,147,229 - -0.0 1,147,229 - -0.4 1,147,230 + -0.2 1,147,230 + +0.3 1,147,230 + -0.3 1,147,362 + +0.2 1,147,362 + +0.4 1,147,362 + +0.0 1,147,363 - -0.4 1,147,395 + +0.2 1,147,662 + SM_b20924 0.20 +0.1 1,147,662 + SM_b20924 0.20 +0.0 1,147,663 - SM_b20924 0.20 +0.1 1,147,663 - SM_b20924 0.20 +0.4 1,147,667 + SM_b20924 0.20 -0.5 1,147,668 - SM_b20924 0.20 -0.1 1,147,693 - SM_b20924 0.22 +1.2 1,147,737 + SM_b20924 0.25 -0.4 1,147,738 - SM_b20924 0.25 -0.8 1,147,749 + SM_b20924 0.26 +0.1 1,147,749 + SM_b20924 0.26 -0.2 1,147,749 + SM_b20924 0.26 -0.1 1,147,750 - SM_b20924 0.26 +0.3 1,147,750 - SM_b20924 0.26 -0.1 1,147,762 - SM_b20924 0.26 +0.6 1,147,762 - SM_b20924 0.26 +0.4 1,147,764 + SM_b20924 0.26 -0.2 1,147,765 - SM_b20924 0.27 +0.0 1,147,765 - SM_b20924 0.27 -0.6 1,147,917 + SM_b20924 0.37 +0.2 1,147,917 + SM_b20924 0.37 +0.1 1,147,918 - SM_b20924 0.37 +0.7 1,148,061 + SM_b20924 0.46 -0.2 1,148,062 - SM_b20924 0.46 -0.2 1,148,091 + SM_b20924 0.48 -0.4 1,148,091 + SM_b20924 0.48 -0.6 1,148,118 + SM_b20924 0.50 +0.3 1,148,119 - SM_b20924 0.50 +0.2 1,148,121 + SM_b20924 0.50 -0.9 1,148,121 + SM_b20924 0.50 +1.1 1,148,122 - SM_b20924 0.50 +1.8 1,148,122 - SM_b20924 0.50 +0.2 1,148,122 - SM_b20924 0.50 +1.4 1,148,122 - SM_b20924 0.50 +0.8 1,148,122 - SM_b20924 0.50 -0.0 1,148,154 + SM_b20924 0.52 -0.3 1,148,173 - SM_b20924 0.53 -0.5 1,148,173 - SM_b20924 0.53 +0.0 1,148,173 - SM_b20924 0.53 -0.4 1,148,187 + SM_b20924 0.54 -0.8 1,148,188 - SM_b20924 0.54 +0.0 1,148,224 - SM_b20924 0.57 +0.3 1,148,283 + SM_b20924 0.61 +0.9 1,148,283 + SM_b20924 0.61 -0.3 1,148,284 - SM_b20924 0.61 -0.1
Or see this region's nucleotide sequence