Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20994 and SM_b20995 are separated by 244 nucleotides SM_b20995 and SM_b20996 are separated by 123 nucleotides SM_b20996 and SM_b20997 are separated by 85 nucleotides
SM_b20994: SM_b20994 - hypothetical protein, at 1,230,297 to 1,230,830
_b20994
SM_b20995: SM_b20995 - GTP-binding protein EngA, at 1,231,075 to 1,232,505
_b20995
SM_b20996: SM_b20996 - hypothetical protein, at 1,232,629 to 1,233,297
_b20996
SM_b20997: SM_b20997 - nitrate reductase, at 1,233,383 to 1,233,967
_b20997
Position (kb)
1231
1232
1233 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1230.194 kb on + strand at 1230.195 kb on - strand at 1230.240 kb on - strand at 1230.250 kb on - strand at 1230.273 kb on + strand at 1230.273 kb on + strand at 1230.273 kb on + strand at 1230.273 kb on + strand at 1230.274 kb on - strand at 1230.274 kb on - strand at 1230.281 kb on - strand at 1230.463 kb on + strand, within SM_b20994 at 1230.464 kb on - strand, within SM_b20994 at 1230.464 kb on - strand, within SM_b20994 at 1230.730 kb on + strand, within SM_b20994 at 1230.730 kb on + strand, within SM_b20994 at 1230.914 kb on + strand at 1230.927 kb on + strand at 1230.928 kb on - strand at 1230.928 kb on - strand at 1230.939 kb on - strand at 1230.940 kb on + strand at 1230.941 kb on - strand at 1230.983 kb on + strand at 1230.987 kb on + strand at 1230.987 kb on + strand at 1230.999 kb on - strand at 1231.012 kb on + strand at 1232.510 kb on - strand at 1232.510 kb on - strand at 1232.561 kb on - strand at 1232.561 kb on - strand at 1233.345 kb on - strand at 1233.366 kb on - strand at 1233.366 kb on - strand at 1233.366 kb on - strand at 1233.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 1,230,194 + +0.5 1,230,195 - +0.0 1,230,240 - -0.4 1,230,250 - +1.6 1,230,273 + +0.3 1,230,273 + -0.1 1,230,273 + -0.4 1,230,273 + +0.4 1,230,274 - +0.2 1,230,274 - -0.1 1,230,281 - +1.5 1,230,463 + SM_b20994 0.31 -3.9 1,230,464 - SM_b20994 0.31 -1.1 1,230,464 - SM_b20994 0.31 -3.7 1,230,730 + SM_b20994 0.81 -2.0 1,230,730 + SM_b20994 0.81 -1.9 1,230,914 + -3.2 1,230,927 + -2.4 1,230,928 - +0.1 1,230,928 - -0.4 1,230,939 - +0.8 1,230,940 + -2.5 1,230,941 - +0.8 1,230,983 + -3.3 1,230,987 + -2.8 1,230,987 + -2.6 1,230,999 - +0.7 1,231,012 + -2.8 1,232,510 - +0.0 1,232,510 - +0.5 1,232,561 - -1.2 1,232,561 - +0.1 1,233,345 - +0.3 1,233,366 - +0.0 1,233,366 - +0.9 1,233,366 - +0.3 1,233,385 - -0.7
Or see this region's nucleotide sequence