Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36680 and RR42_RS36685 are separated by 27 nucleotides RR42_RS36685 and RR42_RS36690 overlap by 4 nucleotides RR42_RS36690 and RR42_RS36695 are separated by 84 nucleotides
RR42_RS36680: RR42_RS36680 - hypothetical protein, at 3,685,609 to 3,686,685
_RS36680
RR42_RS36685: RR42_RS36685 - MarR family transcriptional regulator, at 3,686,713 to 3,687,228
_RS36685
RR42_RS36690: RR42_RS36690 - DNA alkylation repair protein, at 3,687,225 to 3,688,010
_RS36690
RR42_RS36695: RR42_RS36695 - heavy metal resistance protein CzcA, at 3,688,095 to 3,691,223
_RS36695
Position (kb)
3687
3688
3689 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3686.236 kb on + strand, within RR42_RS36680 at 3686.444 kb on - strand, within RR42_RS36680 at 3686.509 kb on + strand, within RR42_RS36680 at 3686.518 kb on + strand, within RR42_RS36680 at 3686.931 kb on + strand, within RR42_RS36685 at 3686.931 kb on + strand, within RR42_RS36685 at 3686.931 kb on + strand, within RR42_RS36685 at 3686.931 kb on + strand, within RR42_RS36685 at 3686.932 kb on - strand, within RR42_RS36685 at 3687.170 kb on + strand, within RR42_RS36685 at 3687.171 kb on - strand, within RR42_RS36685 at 3687.171 kb on - strand, within RR42_RS36685 at 3687.865 kb on - strand, within RR42_RS36690 at 3687.868 kb on + strand, within RR42_RS36690 at 3687.868 kb on + strand, within RR42_RS36690 at 3687.868 kb on + strand, within RR42_RS36690 at 3687.868 kb on + strand, within RR42_RS36690 at 3687.868 kb on + strand, within RR42_RS36690 at 3687.869 kb on - strand, within RR42_RS36690 at 3687.869 kb on - strand, within RR42_RS36690 at 3688.186 kb on + strand at 3688.417 kb on + strand, within RR42_RS36695 at 3688.417 kb on + strand, within RR42_RS36695
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 3,686,236 + RR42_RS36680 0.58 +0.6 3,686,444 - RR42_RS36680 0.78 -2.7 3,686,509 + RR42_RS36680 0.84 +0.3 3,686,518 + RR42_RS36680 0.84 -0.1 3,686,931 + RR42_RS36685 0.42 +0.2 3,686,931 + RR42_RS36685 0.42 -1.1 3,686,931 + RR42_RS36685 0.42 -0.9 3,686,931 + RR42_RS36685 0.42 +0.7 3,686,932 - RR42_RS36685 0.42 -1.2 3,687,170 + RR42_RS36685 0.89 -0.2 3,687,171 - RR42_RS36685 0.89 +2.0 3,687,171 - RR42_RS36685 0.89 +0.2 3,687,865 - RR42_RS36690 0.81 +1.5 3,687,868 + RR42_RS36690 0.82 -0.2 3,687,868 + RR42_RS36690 0.82 +1.5 3,687,868 + RR42_RS36690 0.82 +0.2 3,687,868 + RR42_RS36690 0.82 -0.9 3,687,868 + RR42_RS36690 0.82 +0.3 3,687,869 - RR42_RS36690 0.82 +1.5 3,687,869 - RR42_RS36690 0.82 -0.5 3,688,186 + -0.8 3,688,417 + RR42_RS36695 0.10 -0.8 3,688,417 + RR42_RS36695 0.10 +0.2
Or see this region's nucleotide sequence