Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36260

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
3,584,113	+		RR42_RS36255	0.34	-0.7
3,584,113	+		RR42_RS36255	0.34	+0.1
3,584,113	+		RR42_RS36255	0.34	-0.1
3,584,114	-		RR42_RS36255	0.34	-1.6
3,584,114	-		RR42_RS36255	0.34	+0.6
3,584,114	-		RR42_RS36255	0.34	+0.1
3,584,114	-		RR42_RS36255	0.34	+0.7
3,584,197	+		RR42_RS36255	0.42	+0.6
3,584,198	-		RR42_RS36255	0.42	+1.5
3,584,198	-		RR42_RS36255	0.42	+0.3
3,584,213	+		RR42_RS36255	0.44	-0.7
3,584,262	-		RR42_RS36255	0.49	-2.0
3,584,315	-		RR42_RS36255	0.54	+0.7
3,584,354	+		RR42_RS36255	0.58	+0.0
3,584,354	+		RR42_RS36255	0.58	+0.8
3,584,354	+		RR42_RS36255	0.58	-1.2
3,584,422	+		RR42_RS36255	0.64	-2.2
3,584,422	+		RR42_RS36255	0.64	-0.4
3,584,422	+		RR42_RS36255	0.64	-0.5
3,584,437	+		RR42_RS36255	0.66	+0.7
3,584,438	-		RR42_RS36255	0.66	-1.1
3,584,488	+		RR42_RS36255	0.71	+0.4
3,584,489	-		RR42_RS36255	0.71	+0.6
3,584,489	-		RR42_RS36255	0.71	-0.1
3,584,549	+		RR42_RS36255	0.77	+0.6
3,584,549	+		RR42_RS36255	0.77	-0.8
3,584,549	+		RR42_RS36255	0.77	+1.7
3,584,549	+		RR42_RS36255	0.77	-0.6
3,584,550	-		RR42_RS36255	0.77	+1.9
3,584,550	-		RR42_RS36255	0.77	+1.5
3,584,551	+		RR42_RS36255	0.77	+0.0
3,584,551	+		RR42_RS36255	0.77	-0.4
3,584,551	+		RR42_RS36255	0.77	+0.2
3,584,551	+		RR42_RS36255	0.77	+1.2
3,584,552	-		RR42_RS36255	0.77	+1.4
3,584,760	+				+0.6
3,584,760	+				-0.5
3,584,761	-				+0.5
3,584,761	-				+0.3
3,584,767	+				+0.2
3,584,768	-				-1.6
3,584,768	-				+1.5
3,584,797	+				-1.7
3,584,798	-				+0.5
3,584,798	-				-0.3
3,584,799	+				-0.8
3,584,799	+				-1.1
3,584,799	+				+0.6
3,584,800	-				-1.2
3,584,800	-				+0.9
3,584,888	+				-2.2
3,584,889	-				-0.1
3,584,889	-				-0.5
3,584,903	+				-0.5
3,584,907	-				-1.4
3,584,921	+				-0.1
3,584,921	+				+0.8
3,584,921	+				-0.1
3,584,922	-				-1.1
3,584,922	-				-1.2
3,584,922	-				-0.5
3,584,941	+				-0.2
3,584,941	+				+0.0
3,584,941	+				+1.1
3,584,942	-				+0.2
3,584,942	-				+1.1
3,584,942	-				-0.8
3,584,942	-				+0.1
3,584,942	-				+1.1
3,585,002	+				-0.6
3,585,114	+				+1.5
3,585,114	+				+1.9
3,585,114	+				+0.2
3,585,115	-				-0.8
3,585,130	-				-0.9
3,585,171	+				-0.1
3,585,171	+				-0.1
3,585,171	+				+0.4
3,585,172	-				-0.4
3,585,172	-				-1.2
3,585,172	-				-0.3
3,585,173	+				-1.1
3,585,173	+				+1.5
3,585,173	+				-0.7
3,585,174	-				-2.3
3,585,174	-				+0.9
3,585,174	-				+0.2
3,585,174	-				-2.5
3,585,174	-				-1.9
3,585,662	+		RR42_RS36260	0.45	-0.6
3,585,663	-		RR42_RS36260	0.45	+0.1
3,585,663	-		RR42_RS36260	0.45	-1.1
3,585,663	-		RR42_RS36260	0.45	-0.1
3,585,720	+		RR42_RS36260	0.50	+2.0
3,585,720	+		RR42_RS36260	0.50	+0.7
3,585,720	+		RR42_RS36260	0.50	+0.6
3,585,720	+		RR42_RS36260	0.50	+0.5
3,585,720	+		RR42_RS36260	0.50	-2.2
3,585,720	+		RR42_RS36260	0.50	-0.2
3,585,720	+		RR42_RS36260	0.50	-1.0
3,585,720	+		RR42_RS36260	0.50	-1.9
3,585,720	+		RR42_RS36260	0.50	+0.2
3,585,720	+		RR42_RS36260	0.50	+0.2
3,585,720	+		RR42_RS36260	0.50	-0.7
3,585,720	+		RR42_RS36260	0.50	+0.4
3,585,721	-		RR42_RS36260	0.50	+1.9
3,585,721	-		RR42_RS36260	0.50	-0.1
3,585,721	-		RR42_RS36260	0.50	-1.5
3,585,721	-		RR42_RS36260	0.50	-1.4
3,585,721	-		RR42_RS36260	0.50	+0.5
3,585,721	-		RR42_RS36260	0.50	-1.7
3,585,721	-		RR42_RS36260	0.50	-0.7
3,585,721	-		RR42_RS36260	0.50	+0.0
3,585,889	+		RR42_RS36260	0.63	+0.3
3,585,889	+		RR42_RS36260	0.63	-0.3
3,585,889	+		RR42_RS36260	0.63	-1.2
3,585,889	+		RR42_RS36260	0.63	-0.9
3,585,890	-		RR42_RS36260	0.63	-0.9
3,585,890	-		RR42_RS36260	0.63	-1.0
3,585,890	-		RR42_RS36260	0.63	-0.8
3,585,891	+		RR42_RS36260	0.63	-0.8
3,585,891	+		RR42_RS36260	0.63	-0.8
3,585,891	+		RR42_RS36260	0.63	+1.1
3,585,891	+		RR42_RS36260	0.63	-1.6
3,585,891	+		RR42_RS36260	0.63	-0.5
3,585,892	-		RR42_RS36260	0.63	-0.9
3,585,892	-		RR42_RS36260	0.63	-0.2
3,585,892	-		RR42_RS36260	0.63	-1.7
3,585,892	-		RR42_RS36260	0.63	-1.2
3,585,929	+		RR42_RS36260	0.66	+2.5
3,585,929	+		RR42_RS36260	0.66	-0.5
3,585,930	-		RR42_RS36260	0.66	+0.7
3,586,023	+		RR42_RS36260	0.73	-1.6
3,586,024	-		RR42_RS36260	0.73	-0.5
3,586,082	-		RR42_RS36260	0.77	-0.1
3,586,121	-		RR42_RS36260	0.80	-0.6
3,586,121	-		RR42_RS36260	0.80	-2.0
3,586,208	+		RR42_RS36260	0.87	+0.1
3,586,209	-		RR42_RS36260	0.87	+0.9
3,586,580	+		RR42_RS36265	0.17	-0.3
3,586,581	-		RR42_RS36265	0.17	-0.1
3,586,581	-		RR42_RS36265	0.17	-1.0
3,586,581	-		RR42_RS36265	0.17	-2.6
3,586,601	+		RR42_RS36265	0.18	-1.1
3,586,615	+		RR42_RS36265	0.19	+0.1
3,586,615	+		RR42_RS36265	0.19	+1.2
3,586,616	-		RR42_RS36265	0.19	-0.6
3,586,616	-		RR42_RS36265	0.19	-1.2
3,586,616	-		RR42_RS36265	0.19	-2.9
3,586,712	+		RR42_RS36265	0.27	+1.0
3,586,712	+		RR42_RS36265	0.27	-3.0
3,586,763	+		RR42_RS36265	0.31	-1.8
3,587,075	+		RR42_RS36265	0.57	-1.1
3,587,075	+		RR42_RS36265	0.57	-1.1
3,587,076	-		RR42_RS36265	0.57	-2.4
3,587,076	-		RR42_RS36265	0.57	+0.3
3,587,076	-		RR42_RS36265	0.57	-0.1
3,587,076	-		RR42_RS36265	0.57	-0.8
3,587,181	+		RR42_RS36265	0.65	+1.4
3,587,228	+		RR42_RS36265	0.69	+0.8
3,587,228	+		RR42_RS36265	0.69	+0.3
3,587,228	+		RR42_RS36265	0.69	-0.1
3,587,330	+		RR42_RS36265	0.77	-1.2
3,587,330	+		RR42_RS36265	0.77	-0.1
3,587,330	+		RR42_RS36265	0.77	+0.6