Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36100 and RR42_RS36105 are separated by 167 nucleotides RR42_RS36105 and RR42_RS36110 are separated by 202 nucleotides RR42_RS36110 and RR42_RS36115 are separated by 209 nucleotides
RR42_RS36100: RR42_RS36100 - surface antigen, at 3,549,351 to 3,550,028
_RS36100
RR42_RS36105: RR42_RS36105 - MarR family transcriptional regulator, at 3,550,196 to 3,550,648
_RS36105
RR42_RS36110: RR42_RS36110 - membrane protein, at 3,550,851 to 3,551,420
_RS36110
RR42_RS36115: RR42_RS36115 - hypothetical protein, at 3,551,630 to 3,551,908
_RS36115
Position (kb)
3550
3551 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3549.261 kb on + strand at 3549.261 kb on + strand at 3549.262 kb on - strand at 3549.262 kb on - strand at 3549.262 kb on - strand at 3549.309 kb on - strand at 3549.309 kb on - strand at 3549.313 kb on + strand at 3549.313 kb on + strand at 3549.314 kb on - strand at 3549.409 kb on + strand at 3549.409 kb on + strand at 3549.436 kb on + strand, within RR42_RS36100 at 3549.554 kb on + strand, within RR42_RS36100 at 3549.554 kb on + strand, within RR42_RS36100 at 3549.555 kb on - strand, within RR42_RS36100 at 3549.679 kb on + strand, within RR42_RS36100 at 3549.679 kb on + strand, within RR42_RS36100 at 3549.679 kb on + strand, within RR42_RS36100 at 3549.766 kb on + strand, within RR42_RS36100 at 3549.767 kb on - strand, within RR42_RS36100 at 3549.767 kb on - strand, within RR42_RS36100 at 3549.767 kb on - strand, within RR42_RS36100 at 3549.767 kb on - strand, within RR42_RS36100 at 3549.823 kb on + strand, within RR42_RS36100 at 3549.839 kb on - strand, within RR42_RS36100 at 3549.839 kb on - strand, within RR42_RS36100 at 3549.839 kb on - strand, within RR42_RS36100 at 3549.895 kb on + strand, within RR42_RS36100 at 3549.895 kb on + strand, within RR42_RS36100 at 3549.896 kb on - strand, within RR42_RS36100 at 3549.913 kb on + strand, within RR42_RS36100 at 3549.914 kb on - strand, within RR42_RS36100 at 3549.931 kb on + strand, within RR42_RS36100 at 3549.931 kb on + strand, within RR42_RS36100 at 3549.943 kb on + strand, within RR42_RS36100 at 3550.506 kb on + strand, within RR42_RS36105 at 3550.507 kb on - strand, within RR42_RS36105 at 3550.507 kb on - strand, within RR42_RS36105 at 3550.648 kb on + strand at 3550.649 kb on - strand at 3550.693 kb on + strand at 3550.693 kb on + strand at 3550.693 kb on + strand at 3550.694 kb on - strand at 3550.694 kb on - strand at 3550.694 kb on - strand at 3550.694 kb on - strand at 3550.694 kb on - strand at 3550.694 kb on - strand at 3550.694 kb on - strand at 3550.695 kb on + strand at 3550.695 kb on + strand at 3550.696 kb on - strand at 3550.883 kb on + strand at 3550.884 kb on - strand at 3550.975 kb on + strand, within RR42_RS36110 at 3550.976 kb on - strand, within RR42_RS36110 at 3550.976 kb on - strand, within RR42_RS36110 at 3551.128 kb on - strand, within RR42_RS36110 at 3551.162 kb on + strand, within RR42_RS36110 at 3551.162 kb on + strand, within RR42_RS36110 at 3551.575 kb on + strand at 3551.575 kb on + strand at 3551.575 kb on + strand at 3551.575 kb on + strand at 3551.576 kb on - strand at 3551.576 kb on - strand at 3551.576 kb on - strand at 3551.576 kb on - strand at 3551.576 kb on - strand at 3551.576 kb on - strand at 3551.580 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 3,549,261 + +0.1 3,549,261 + +0.3 3,549,262 - +2.5 3,549,262 - +0.5 3,549,262 - -0.0 3,549,309 - +2.0 3,549,309 - -1.6 3,549,313 + -0.4 3,549,313 + +0.6 3,549,314 - +0.4 3,549,409 + +1.1 3,549,409 + +1.2 3,549,436 + RR42_RS36100 0.13 -0.2 3,549,554 + RR42_RS36100 0.30 +1.2 3,549,554 + RR42_RS36100 0.30 -0.2 3,549,555 - RR42_RS36100 0.30 -0.0 3,549,679 + RR42_RS36100 0.48 -0.5 3,549,679 + RR42_RS36100 0.48 -0.7 3,549,679 + RR42_RS36100 0.48 -1.1 3,549,766 + RR42_RS36100 0.61 -0.8 3,549,767 - RR42_RS36100 0.61 -0.0 3,549,767 - RR42_RS36100 0.61 +0.4 3,549,767 - RR42_RS36100 0.61 -0.6 3,549,767 - RR42_RS36100 0.61 -0.6 3,549,823 + RR42_RS36100 0.70 +0.1 3,549,839 - RR42_RS36100 0.72 +1.3 3,549,839 - RR42_RS36100 0.72 +0.2 3,549,839 - RR42_RS36100 0.72 +1.3 3,549,895 + RR42_RS36100 0.80 +0.5 3,549,895 + RR42_RS36100 0.80 +0.5 3,549,896 - RR42_RS36100 0.80 -0.1 3,549,913 + RR42_RS36100 0.83 -0.8 3,549,914 - RR42_RS36100 0.83 +0.4 3,549,931 + RR42_RS36100 0.86 -0.5 3,549,931 + RR42_RS36100 0.86 +0.2 3,549,943 + RR42_RS36100 0.87 -2.1 3,550,506 + RR42_RS36105 0.68 +1.1 3,550,507 - RR42_RS36105 0.69 -0.9 3,550,507 - RR42_RS36105 0.69 +0.7 3,550,648 + +0.3 3,550,649 - -0.5 3,550,693 + -0.2 3,550,693 + -0.3 3,550,693 + +1.8 3,550,694 - +0.5 3,550,694 - -1.9 3,550,694 - -0.1 3,550,694 - -0.4 3,550,694 - -0.7 3,550,694 - -1.2 3,550,694 - +0.4 3,550,695 + -0.7 3,550,695 + +1.0 3,550,696 - +0.5 3,550,883 + -1.7 3,550,884 - -2.0 3,550,975 + RR42_RS36110 0.22 -2.0 3,550,976 - RR42_RS36110 0.22 -1.7 3,550,976 - RR42_RS36110 0.22 -1.6 3,551,128 - RR42_RS36110 0.49 -1.5 3,551,162 + RR42_RS36110 0.55 -1.5 3,551,162 + RR42_RS36110 0.55 +0.2 3,551,575 + -0.7 3,551,575 + -0.7 3,551,575 + -0.2 3,551,575 + -0.1 3,551,576 - -0.2 3,551,576 - -0.1 3,551,576 - +0.4 3,551,576 - -0.8 3,551,576 - +0.6 3,551,576 - -0.5 3,551,580 + -0.3
Or see this region's nucleotide sequence