Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35940

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
3,510,971	+		RR42_RS35935	0.41	-0.1
3,510,972	-		RR42_RS35935	0.41	+2.1
3,511,254	-		RR42_RS35935	0.66	-1.9
3,511,265	+		RR42_RS35935	0.67	-1.0
3,511,266	-		RR42_RS35935	0.67	+0.1
3,511,273	+		RR42_RS35935	0.67	+0.9
3,511,273	+		RR42_RS35935	0.67	+0.6
3,511,273	+		RR42_RS35935	0.67	-1.1
3,511,274	-		RR42_RS35935	0.67	-0.4
3,511,274	-		RR42_RS35935	0.67	-0.2
3,511,274	-		RR42_RS35935	0.67	-2.7
3,511,499	+		RR42_RS35935	0.87	+0.7
3,511,499	+		RR42_RS35935	0.87	-0.5
3,511,499	+		RR42_RS35935	0.87	+0.9
3,511,500	-		RR42_RS35935	0.87	-0.6
3,511,606	+				-0.3
3,511,607	-				+0.9
3,511,666	+				-2.3
3,511,666	+				-0.5
3,511,667	-				+0.2
3,511,707	+				-0.4
3,511,707	+				+1.0
3,511,707	+				+0.3
3,511,707	+				+1.0
3,511,708	-				-1.9
3,511,758	+				+0.0
3,511,759	-				-0.1
3,511,828	+				-0.2
3,511,828	+				+0.5
3,511,828	+				+0.7
3,511,828	+				+0.1
3,511,828	+				-0.5
3,511,829	-				+0.8
3,511,829	-				-0.7
3,511,921	+				+1.1
3,511,922	-				-0.6
3,511,971	+				+3.1
3,511,971	+				+1.0
3,512,391	+		RR42_RS35940	0.44	+0.7
3,512,392	-		RR42_RS35940	0.45	+0.2
3,512,478	+		RR42_RS35940	0.54	+0.2
3,512,478	+		RR42_RS35940	0.54	+2.5
3,512,479	-		RR42_RS35940	0.54	+1.1
3,512,479	-		RR42_RS35940	0.54	+0.5
3,512,479	-		RR42_RS35940	0.54	+1.9
3,512,479	-		RR42_RS35940	0.54	+0.5
3,512,613	+		RR42_RS35940	0.68	-0.3
3,512,614	-		RR42_RS35940	0.68	+0.3
3,512,677	+		RR42_RS35940	0.75	-1.0
3,512,677	+		RR42_RS35940	0.75	+0.6
3,512,677	+		RR42_RS35940	0.75	+0.9
3,512,677	+		RR42_RS35940	0.75	-0.3
3,512,677	+		RR42_RS35940	0.75	+0.1
3,512,677	+		RR42_RS35940	0.75	+0.5
3,512,677	+		RR42_RS35940	0.75	+0.4
3,512,678	-		RR42_RS35940	0.75	+0.2
3,512,678	-		RR42_RS35940	0.75	-0.3
3,512,678	-		RR42_RS35940	0.75	-0.0
3,512,680	-		RR42_RS35940	0.75	+0.3
3,512,760	-		RR42_RS35940	0.83	+0.0
3,512,848	+				+0.2
3,512,908	+				-0.2
3,512,909	-				+0.5
3,512,982	-				+0.6
3,513,054	+				+2.5
3,513,054	+				-0.6
3,513,054	+				+0.1
3,513,054	+				-0.2
3,513,055	-				-0.8
3,513,056	+				+1.1
3,513,056	+				-0.3
3,513,056	+				-0.7
3,513,056	+				-0.4
3,513,057	-				-0.4
3,513,057	-				-3.2
3,513,057	-				-0.5
3,513,110	+				+0.1
3,513,111	-				+0.1
3,513,111	-				+0.1
3,513,111	-				-0.4
3,513,199	-				+0.6
3,513,306	+				-0.7
3,513,306	+				+1.8
3,513,307	-				+0.1
3,513,307	-				+0.8
3,513,307	-				+0.2
3,513,410	+				-0.4
3,513,411	-				-0.4
3,513,417	+				-2.0
3,513,479	+		RR42_RS35945	0.15	+1.5
3,513,480	-		RR42_RS35945	0.15	-0.1
3,513,581	+		RR42_RS35945	0.27	-0.2
3,513,584	+		RR42_RS35945	0.27	-1.0
3,513,584	+		RR42_RS35945	0.27	-0.5
3,513,584	+		RR42_RS35945	0.27	+0.0
3,513,584	+		RR42_RS35945	0.27	+0.1
3,513,584	+		RR42_RS35945	0.27	+1.9
3,513,584	+		RR42_RS35945	0.27	+2.5
3,513,584	+		RR42_RS35945	0.27	+0.2
3,513,585	-		RR42_RS35945	0.27	-1.1
3,513,585	-		RR42_RS35945	0.27	+1.0
3,513,587	+		RR42_RS35945	0.27	+0.5
3,513,588	-		RR42_RS35945	0.28	-0.5
3,513,602	+		RR42_RS35945	0.29	-0.0
3,513,602	+		RR42_RS35945	0.29	+1.2
3,513,602	+		RR42_RS35945	0.29	-0.8
3,513,602	-		RR42_RS35945	0.29	-0.3
3,513,603	-		RR42_RS35945	0.29	+0.1
3,513,603	-		RR42_RS35945	0.29	+0.3
3,513,603	-		RR42_RS35945	0.29	+0.4
3,513,671	+		RR42_RS35945	0.37	-0.8