Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35390

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
3,393,148	+		RR42_RS35380	0.57	-0.1
3,393,148	+		RR42_RS35380	0.57	-1.2
3,393,148	+		RR42_RS35380	0.57	-1.7
3,393,149	-		RR42_RS35380	0.57	+0.1
3,393,157	+		RR42_RS35380	0.61	+0.3
3,393,157	+		RR42_RS35380	0.61	-2.3
3,393,157	+		RR42_RS35380	0.61	-1.8
3,393,157	+		RR42_RS35380	0.61	-1.0
3,393,157	+		RR42_RS35380	0.61	-0.4
3,393,158	-		RR42_RS35380	0.62	-0.8
3,393,245	-				-0.4
3,393,245	-				+1.4
3,393,245	-				-0.6
3,393,394	+				-0.4
3,393,395	-				-0.7
3,393,605	-		RR42_RS35385	0.15	-0.7
3,393,605	-		RR42_RS35385	0.15	+0.9
3,393,607	+		RR42_RS35385	0.16	-0.2
3,393,731	+		RR42_RS35385	0.69	-0.7
3,393,732	-		RR42_RS35385	0.70	-0.6
3,393,828	-				+0.9
3,393,852	+				+0.9
3,393,853	-				+1.3
3,393,883	-				-0.1
3,393,941	-				-0.5
3,393,953	+				+0.0
3,393,954	-				-0.5
3,393,954	-				-1.0
3,394,019	+				-0.2
3,394,041	+				+0.0
3,394,042	-				+0.1
3,394,042	-				-1.7
3,394,042	-				-0.3
3,394,114	+		RR42_RS35390	0.14	+1.1
3,394,115	-		RR42_RS35390	0.15	-0.9
3,394,239	+		RR42_RS35390	0.39	-0.9
3,394,240	+				+1.4
3,394,240	+		RR42_RS35390	0.39	+0.7
3,394,240	+		RR42_RS35390	0.39	+0.1
3,394,241	-		RR42_RS35390	0.39	+0.4
3,394,241	-		RR42_RS35390	0.39	+0.4
3,394,243	+		RR42_RS35390	0.40	-0.5
3,394,244	-		RR42_RS35390	0.40	-1.6
3,394,244	-		RR42_RS35390	0.40	-0.1
3,394,253	+		RR42_RS35390	0.42	-0.5
3,394,253	+		RR42_RS35390	0.42	-0.1
3,394,253	+		RR42_RS35390	0.42	+0.7
3,394,259	-		RR42_RS35390	0.43	-0.3
3,394,331	+		RR42_RS35390	0.57	-0.9
3,394,333	+		RR42_RS35390	0.57	+1.4
3,394,333	+		RR42_RS35390	0.57	+0.3
3,394,333	+		RR42_RS35390	0.57	-1.0
3,394,333	+		RR42_RS35390	0.57	-0.7
3,394,333	+		RR42_RS35390	0.57	-0.9
3,394,333	+		RR42_RS35390	0.57	+1.2
3,394,334	-		RR42_RS35390	0.57	-0.9
3,394,334	-		RR42_RS35390	0.57	-1.4
3,394,334	-		RR42_RS35390	0.57	-0.2
3,394,423	+		RR42_RS35390	0.75	-0.3
3,394,445	-		RR42_RS35390	0.79	+0.1
3,394,490	+		RR42_RS35390	0.88	-0.3
3,394,522	+				-0.7
3,394,522	+				+1.3
3,394,523	-				+0.9
3,394,538	+				+0.1
3,394,579	+				+1.0
3,394,579	+				-0.1
3,394,579	+				-1.1
3,394,580	-				-0.1
3,394,580	-				-0.7
3,394,709	-		RR42_RS35395	0.57	-0.4
3,394,709	-		RR42_RS35395	0.57	+0.3
3,394,718	+		RR42_RS35395	0.62	-1.9
3,394,718	+		RR42_RS35395	0.62	+0.9
3,394,719	-		RR42_RS35395	0.62	-0.4
3,394,836	+				+1.4
3,394,836	+				+0.4
3,394,877	+				+0.1
3,394,877	+				+0.7
3,394,877	+				-0.5
3,394,877	+				-0.8
3,394,877	+				+0.4
3,394,878	-				+0.3
3,394,878	-				-0.0
3,394,914	+				+0.5
3,394,962	+				+0.5
3,395,029	+				+1.7
3,395,029	+				+0.4
3,395,029	+				-0.4
3,395,029	+				-0.7
3,395,065	-				+1.1
3,395,124	+				+1.0
3,395,193	-				-0.0
3,395,247	+				+1.3
3,395,248	-				-1.3
3,395,253	+				+0.8
3,395,253	+				+0.3
3,395,253	+				+0.5
3,395,266	+				-0.3
3,395,286	+				-1.8
3,395,304	+				+0.9
3,395,304	+				+0.1
3,395,304	+				-0.3
3,395,304	+				+1.3
3,395,305	-				-1.2
3,395,305	-				+0.4
3,395,305	-				-0.9
3,395,351	-		RR42_RS35400	0.11	+1.0
3,395,351	-		RR42_RS35400	0.11	+0.1
3,395,351	-		RR42_RS35400	0.11	-0.3
3,395,368	+		RR42_RS35400	0.13	+0.7
3,395,368	+		RR42_RS35400	0.13	+3.0
3,395,368	+		RR42_RS35400	0.13	-0.6
3,395,414	+		RR42_RS35400	0.19	+1.0
3,395,414	+		RR42_RS35400	0.19	+0.7
3,395,415	-		RR42_RS35400	0.19	+0.5
3,395,415	-		RR42_RS35400	0.19	-0.7
3,395,415	-		RR42_RS35400	0.19	-0.5
3,395,458	-		RR42_RS35400	0.25	+0.9
3,395,464	+		RR42_RS35400	0.26	+0.3
3,395,464	+		RR42_RS35400	0.26	+1.1
3,395,464	+		RR42_RS35400	0.26	-0.7
3,395,464	+		RR42_RS35400	0.26	+1.4
3,395,465	-		RR42_RS35400	0.26	+0.2