Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35375

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
3,390,769	+		RR42_RS35370	0.41	-0.5
3,390,841	+		RR42_RS35370	0.47	+1.9
3,390,841	+		RR42_RS35370	0.47	-1.1
3,390,897	+		RR42_RS35370	0.51	-0.9
3,390,898	-		RR42_RS35370	0.51	+2.0
3,391,020	+		RR42_RS35370	0.61	+0.6
3,391,020	+		RR42_RS35370	0.61	+1.4
3,391,020	+		RR42_RS35370	0.61	+1.7
3,391,021	-		RR42_RS35370	0.61	+0.1
3,391,021	-		RR42_RS35370	0.61	-0.8
3,391,056	+		RR42_RS35370	0.64	-1.2
3,391,081	+		RR42_RS35370	0.66	+0.6
3,391,169	-		RR42_RS35370	0.72	-1.0
3,391,169	-		RR42_RS35370	0.72	+0.5
3,391,298	-		RR42_RS35370	0.82	-1.3
3,391,371	+		RR42_RS35370	0.88	-0.2
3,391,371	+		RR42_RS35370	0.88	-0.3
3,391,372	-		RR42_RS35370	0.88	-0.4
3,391,372	-		RR42_RS35370	0.88	+0.9
3,391,502	+				-0.6
3,391,529	+				+0.1
3,391,529	+				+0.1
3,391,594	+				+0.9
3,391,594	+				-1.0
3,391,595	-				-1.5
3,391,667	+				-0.9
3,391,667	+				-0.1
3,391,667	+				+0.2
3,391,667	+				-0.2
3,391,668	-				+0.5
3,391,668	-				+0.9
3,391,671	+				+0.4
3,391,739	+		RR42_RS35375	0.10	-0.1
3,391,814	+		RR42_RS35375	0.16	+0.3
3,391,814	+		RR42_RS35375	0.16	-0.9
3,391,815	-		RR42_RS35375	0.16	+0.0
3,391,835	+		RR42_RS35375	0.17	-2.1
3,391,899	+		RR42_RS35375	0.22	-0.1
3,391,900	-		RR42_RS35375	0.22	-0.1
3,391,901	+		RR42_RS35375	0.22	+0.2
3,391,901	+		RR42_RS35375	0.22	+0.4
3,391,989	+		RR42_RS35375	0.29	-0.5
3,391,989	+		RR42_RS35375	0.29	-1.4
3,392,034	+		RR42_RS35375	0.32	+0.7
3,392,103	+		RR42_RS35375	0.37	-0.5
3,392,438	+		RR42_RS35375	0.62	-2.6
3,392,438	+		RR42_RS35375	0.62	-0.0
3,392,438	+		RR42_RS35375	0.62	+0.6
3,392,438	+		RR42_RS35375	0.62	+0.6
3,392,439	-		RR42_RS35375	0.62	-1.9
3,392,488	+		RR42_RS35375	0.65	-1.5
3,392,488	+		RR42_RS35375	0.65	+0.4
3,392,488	+		RR42_RS35375	0.65	+0.4
3,392,489	-		RR42_RS35375	0.65	-0.9
3,392,515	+		RR42_RS35375	0.67	+0.5
3,392,550	+		RR42_RS35375	0.70	+0.4
3,392,565	+		RR42_RS35375	0.71	+0.8
3,392,565	+		RR42_RS35375	0.71	+0.6
3,392,566	-		RR42_RS35375	0.71	-0.1
3,392,628	+		RR42_RS35375	0.76	+2.1
3,392,628	+		RR42_RS35375	0.76	+0.6
3,392,647	+		RR42_RS35375	0.77	+0.6
3,392,647	+		RR42_RS35375	0.77	-0.8
3,392,647	+		RR42_RS35375	0.77	-1.1
3,392,647	+		RR42_RS35375	0.77	+0.5
3,392,652	-		RR42_RS35375	0.77	+0.4
3,392,681	+		RR42_RS35375	0.80	-0.4
3,392,681	+		RR42_RS35375	0.80	-1.1
3,392,682	-		RR42_RS35375	0.80	+0.1
3,392,722	+		RR42_RS35375	0.83	+0.6
3,392,774	+		RR42_RS35375	0.86	+0.5
3,392,774	+		RR42_RS35375	0.86	+0.1
3,392,774	+		RR42_RS35375	0.86	-0.4
3,392,774	+		RR42_RS35375	0.86	+0.4
3,392,774	+		RR42_RS35375	0.86	-1.8
3,392,775	-		RR42_RS35375	0.86	+1.1
3,392,775	-		RR42_RS35375	0.86	-0.8
3,392,775	-		RR42_RS35375	0.86	-0.7
3,392,775	-		RR42_RS35375	0.86	+0.3
3,392,775	-		RR42_RS35375	0.86	+1.4
3,392,941	+				-1.5
3,392,941	+				-0.6
3,392,941	+				-0.4
3,392,941	+				-0.3
3,392,941	+				-0.3
3,392,942	-				+0.4
3,392,942	-				-1.7
3,392,942	-				+0.2
3,392,942	-				-0.9
3,392,942	-				-0.1
3,392,942	-				+0.1
3,392,942	-				-1.5
3,392,949	+				+2.4
3,392,949	+				+0.2
3,392,949	+				-0.5
3,392,949	+				+0.9
3,393,148	+		RR42_RS35380	0.57	-0.1
3,393,148	+		RR42_RS35380	0.57	-1.2
3,393,148	+		RR42_RS35380	0.57	-1.7
3,393,149	-		RR42_RS35380	0.57	+0.1
3,393,157	+		RR42_RS35380	0.61	+0.3
3,393,157	+		RR42_RS35380	0.61	-2.3
3,393,157	+		RR42_RS35380	0.61	-1.8
3,393,157	+		RR42_RS35380	0.61	-1.0
3,393,157	+		RR42_RS35380	0.61	-0.4
3,393,158	-		RR42_RS35380	0.62	-0.8
3,393,245	-				-0.4
3,393,245	-				+1.4
3,393,245	-				-0.6
3,393,394	+				-0.4
3,393,395	-				-0.7
3,393,605	-		RR42_RS35385	0.15	-0.7
3,393,605	-		RR42_RS35385	0.15	+0.9
3,393,607	+		RR42_RS35385	0.16	-0.2
3,393,731	+		RR42_RS35385	0.69	-0.7
3,393,732	-		RR42_RS35385	0.70	-0.6
3,393,828	-				+0.9
3,393,852	+				+0.9
3,393,853	-				+1.3
3,393,883	-				-0.1
3,393,941	-				-0.5
3,393,953	+				+0.0
3,393,954	-				-0.5
3,393,954	-				-1.0