Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS34515 and RR42_RS34520 are separated by 190 nucleotides RR42_RS34520 and RR42_RS34525 are separated by 74 nucleotides RR42_RS34525 and RR42_RS34530 overlap by 4 nucleotides
RR42_RS34515: RR42_RS34515 - acyltransferase, at 3,175,716 to 3,176,858
_RS34515
RR42_RS34520: RR42_RS34520 - transposase, at 3,177,049 to 3,177,483
_RS34520
RR42_RS34525: RR42_RS34525 - type VI secretion protein VasK, at 3,177,558 to 3,181,133
_RS34525
RR42_RS34530: RR42_RS34530 - hypothetical protein, at 3,181,130 to 3,182,371
_RS34530
Position (kb)
3177
3178
3179
3180
3181
3182 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3176.598 kb on + strand, within RR42_RS34515 at 3176.605 kb on - strand, within RR42_RS34515 at 3176.613 kb on + strand, within RR42_RS34515 at 3176.613 kb on + strand, within RR42_RS34515 at 3176.614 kb on - strand, within RR42_RS34515 at 3176.614 kb on - strand, within RR42_RS34515 at 3176.914 kb on + strand at 3176.914 kb on + strand at 3177.009 kb on + strand at 3177.009 kb on + strand at 3177.010 kb on - strand at 3177.010 kb on - strand at 3177.013 kb on + strand at 3177.013 kb on + strand at 3177.014 kb on - strand at 3177.014 kb on - strand at 3177.015 kb on + strand at 3177.015 kb on + strand at 3177.015 kb on + strand at 3177.016 kb on - strand at 3177.016 kb on - strand at 3177.016 kb on - strand at 3177.428 kb on + strand, within RR42_RS34520 at 3177.472 kb on - strand at 3177.472 kb on - strand at 3178.925 kb on - strand, within RR42_RS34525 at 3179.212 kb on + strand, within RR42_RS34525 at 3179.212 kb on + strand, within RR42_RS34525 at 3179.495 kb on - strand, within RR42_RS34525 at 3179.495 kb on - strand, within RR42_RS34525 at 3180.810 kb on + strand at 3180.889 kb on + strand at 3180.890 kb on - strand at 3180.890 kb on - strand at 3180.950 kb on - strand at 3181.083 kb on + strand at 3181.091 kb on + strand at 3181.099 kb on + strand at 3181.099 kb on + strand at 3181.100 kb on - strand at 3181.100 kb on - strand at 3181.100 kb on - strand at 3181.100 kb on - strand at 3181.108 kb on - strand at 3181.124 kb on - strand at 3181.583 kb on + strand, within RR42_RS34530 at 3181.584 kb on - strand, within RR42_RS34530 at 3181.584 kb on - strand, within RR42_RS34530 at 3181.694 kb on + strand, within RR42_RS34530 at 3181.694 kb on + strand, within RR42_RS34530 at 3181.695 kb on - strand, within RR42_RS34530 at 3181.695 kb on - strand, within RR42_RS34530 at 3181.695 kb on - strand, within RR42_RS34530 at 3181.757 kb on + strand, within RR42_RS34530 at 3181.758 kb on - strand, within RR42_RS34530 at 3181.763 kb on + strand, within RR42_RS34530 at 3181.764 kb on - strand, within RR42_RS34530 at 3181.764 kb on - strand, within RR42_RS34530 at 3181.847 kb on - strand, within RR42_RS34530
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 3,176,598 + RR42_RS34515 0.77 -0.8 3,176,605 - RR42_RS34515 0.78 -1.8 3,176,613 + RR42_RS34515 0.78 +0.0 3,176,613 + RR42_RS34515 0.78 +0.6 3,176,614 - RR42_RS34515 0.79 -0.0 3,176,614 - RR42_RS34515 0.79 +0.1 3,176,914 + -0.2 3,176,914 + -0.7 3,177,009 + -0.1 3,177,009 + -1.3 3,177,010 - +0.9 3,177,010 - -0.1 3,177,013 + +0.1 3,177,013 + -0.8 3,177,014 - +0.0 3,177,014 - +0.9 3,177,015 + +0.1 3,177,015 + -2.4 3,177,015 + +0.1 3,177,016 - -1.0 3,177,016 - -0.7 3,177,016 - +1.3 3,177,428 + RR42_RS34520 0.87 -0.7 3,177,472 - -0.2 3,177,472 - -0.6 3,178,925 - RR42_RS34525 0.38 +2.3 3,179,212 + RR42_RS34525 0.46 +0.6 3,179,212 + RR42_RS34525 0.46 +0.2 3,179,495 - RR42_RS34525 0.54 +1.2 3,179,495 - RR42_RS34525 0.54 +1.0 3,180,810 + -1.7 3,180,889 + -0.8 3,180,890 - +0.7 3,180,890 - -0.4 3,180,950 - -0.8 3,181,083 + -1.1 3,181,091 + -0.7 3,181,099 + +1.1 3,181,099 + -0.6 3,181,100 - -2.4 3,181,100 - +1.5 3,181,100 - -0.4 3,181,100 - -0.8 3,181,108 - +0.3 3,181,124 - +0.1 3,181,583 + RR42_RS34530 0.36 +0.3 3,181,584 - RR42_RS34530 0.37 -0.5 3,181,584 - RR42_RS34530 0.37 -1.2 3,181,694 + RR42_RS34530 0.45 +0.3 3,181,694 + RR42_RS34530 0.45 +0.0 3,181,695 - RR42_RS34530 0.45 -0.5 3,181,695 - RR42_RS34530 0.45 -0.5 3,181,695 - RR42_RS34530 0.45 +0.8 3,181,757 + RR42_RS34530 0.50 -1.3 3,181,758 - RR42_RS34530 0.51 -0.5 3,181,763 + RR42_RS34530 0.51 +0.1 3,181,764 - RR42_RS34530 0.51 -0.7 3,181,764 - RR42_RS34530 0.51 +0.5 3,181,847 - RR42_RS34530 0.58 -0.3
Or see this region's nucleotide sequence