Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34525

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
3,176,598	+		RR42_RS34515	0.77	-0.8
3,176,605	-		RR42_RS34515	0.78	-1.8
3,176,613	+		RR42_RS34515	0.78	+0.0
3,176,613	+		RR42_RS34515	0.78	+0.6
3,176,614	-		RR42_RS34515	0.79	-0.0
3,176,614	-		RR42_RS34515	0.79	+0.1
3,176,914	+				-0.2
3,176,914	+				-0.7
3,177,009	+				-0.1
3,177,009	+				-1.3
3,177,010	-				+0.9
3,177,010	-				-0.1
3,177,013	+				+0.1
3,177,013	+				-0.8
3,177,014	-				+0.0
3,177,014	-				+0.9
3,177,015	+				+0.1
3,177,015	+				-2.4
3,177,015	+				+0.1
3,177,016	-				-1.0
3,177,016	-				-0.7
3,177,016	-				+1.3
3,177,428	+		RR42_RS34520	0.87	-0.7
3,177,472	-				-0.2
3,177,472	-				-0.6
3,178,925	-		RR42_RS34525	0.38	+2.3
3,179,212	+		RR42_RS34525	0.46	+0.6
3,179,212	+		RR42_RS34525	0.46	+0.2
3,179,495	-		RR42_RS34525	0.54	+1.2
3,179,495	-		RR42_RS34525	0.54	+1.0
3,180,810	+				-1.7
3,180,889	+				-0.8
3,180,890	-				+0.7
3,180,890	-				-0.4
3,180,950	-				-0.8
3,181,083	+				-1.1
3,181,091	+				-0.7
3,181,099	+				+1.1
3,181,099	+				-0.6
3,181,100	-				-2.4
3,181,100	-				+1.5
3,181,100	-				-0.4
3,181,100	-				-0.8
3,181,108	-				+0.3
3,181,124	-				+0.1
3,181,583	+		RR42_RS34530	0.36	+0.3
3,181,584	-		RR42_RS34530	0.37	-0.5
3,181,584	-		RR42_RS34530	0.37	-1.2
3,181,694	+		RR42_RS34530	0.45	+0.3
3,181,694	+		RR42_RS34530	0.45	+0.0
3,181,695	-		RR42_RS34530	0.45	-0.5
3,181,695	-		RR42_RS34530	0.45	-0.5
3,181,695	-		RR42_RS34530	0.45	+0.8
3,181,757	+		RR42_RS34530	0.50	-1.3
3,181,758	-		RR42_RS34530	0.51	-0.5
3,181,763	+		RR42_RS34530	0.51	+0.1
3,181,764	-		RR42_RS34530	0.51	-0.7
3,181,764	-		RR42_RS34530	0.51	+0.5
3,181,847	-		RR42_RS34530	0.58	-0.3