Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS31400 and RR42_RS31405 are separated by 387 nucleotides
RR42_RS31400: RR42_RS31400 - GntR family transcriptional regulator, at 2,421,012 to 2,421,890
_RS31400
RR42_RS31405: RR42_RS31405 - hypothetical protein, at 2,422,278 to 2,422,463
_RS31405
Position (kb)
2422
2423 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2421.536 kb on - strand, within RR42_RS31400 at 2421.832 kb on + strand at 2421.832 kb on + strand at 2421.832 kb on + strand at 2421.833 kb on - strand at 2421.833 kb on - strand at 2421.833 kb on - strand at 2421.833 kb on - strand at 2421.853 kb on + strand at 2421.857 kb on + strand at 2421.857 kb on + strand at 2421.858 kb on - strand at 2421.937 kb on - strand at 2422.026 kb on - strand at 2422.147 kb on + strand at 2422.193 kb on + strand at 2422.194 kb on - strand at 2422.194 kb on - strand at 2422.194 kb on - strand at 2422.194 kb on - strand at 2422.195 kb on + strand at 2422.195 kb on + strand at 2422.196 kb on - strand at 2422.197 kb on + strand at 2422.198 kb on - strand at 2422.198 kb on - strand at 2422.198 kb on - strand at 2422.198 kb on - strand at 2422.198 kb on - strand at 2422.224 kb on - strand at 2422.224 kb on - strand at 2422.512 kb on - strand at 2422.546 kb on + strand at 2422.550 kb on - strand at 2422.550 kb on - strand at 2422.550 kb on - strand at 2422.550 kb on - strand at 2422.554 kb on - strand at 2422.554 kb on - strand at 2422.585 kb on + strand at 2422.586 kb on - strand at 2422.586 kb on - strand at 2422.641 kb on - strand at 2422.690 kb on + strand at 2422.691 kb on - strand at 2422.717 kb on - strand at 2422.755 kb on + strand at 2422.756 kb on - strand at 2422.756 kb on - strand at 2422.760 kb on + strand at 2422.761 kb on - strand at 2422.761 kb on - strand at 2422.777 kb on + strand at 2422.778 kb on - strand at 2422.874 kb on - strand at 2422.919 kb on + strand at 2422.931 kb on - strand at 2423.030 kb on + strand at 2423.031 kb on - strand at 2423.031 kb on - strand at 2423.040 kb on - strand at 2423.168 kb on + strand at 2423.168 kb on + strand at 2423.168 kb on + strand at 2423.169 kb on - strand at 2423.235 kb on + strand at 2423.236 kb on - strand at 2423.383 kb on - strand at 2423.383 kb on - strand at 2423.383 kb on - strand at 2423.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 2,421,536 - RR42_RS31400 0.60 -0.7 2,421,832 + +1.0 2,421,832 + +1.8 2,421,832 + +0.5 2,421,833 - +0.7 2,421,833 - -1.2 2,421,833 - +0.4 2,421,833 - +0.5 2,421,853 + +1.2 2,421,857 + +0.2 2,421,857 + -0.7 2,421,858 - -0.8 2,421,937 - +0.1 2,422,026 - +0.7 2,422,147 + +1.2 2,422,193 + +0.2 2,422,194 - -0.5 2,422,194 - -0.7 2,422,194 - -0.4 2,422,194 - +1.5 2,422,195 + -0.8 2,422,195 + -0.4 2,422,196 - +1.6 2,422,197 + -0.3 2,422,198 - -0.0 2,422,198 - +0.4 2,422,198 - +1.3 2,422,198 - +1.0 2,422,198 - +0.5 2,422,224 - -0.3 2,422,224 - -2.2 2,422,512 - +0.3 2,422,546 + -1.1 2,422,550 - -0.8 2,422,550 - +1.5 2,422,550 - -0.5 2,422,550 - +0.6 2,422,554 - -0.5 2,422,554 - +0.1 2,422,585 + -0.1 2,422,586 - +0.5 2,422,586 - -1.1 2,422,641 - +0.9 2,422,690 + -0.2 2,422,691 - -0.6 2,422,717 - +0.8 2,422,755 + -0.5 2,422,756 - +0.5 2,422,756 - -0.3 2,422,760 + -0.1 2,422,761 - +0.3 2,422,761 - -0.6 2,422,777 + +1.1 2,422,778 - -0.5 2,422,874 - -0.0 2,422,919 + -1.2 2,422,931 - -0.3 2,423,030 + +0.2 2,423,031 - +1.9 2,423,031 - +0.5 2,423,040 - +2.1 2,423,168 + -0.9 2,423,168 + +0.3 2,423,168 + +1.3 2,423,169 - +0.1 2,423,235 + +0.5 2,423,236 - -0.9 2,423,383 - +0.4 2,423,383 - -0.0 2,423,383 - +1.5 2,423,411 - -2.5
Or see this region's nucleotide sequence