Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31315

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
2,399,328	-		RR42_RS31310	0.71	+0.1
2,399,339	+		RR42_RS31310	0.71	-0.5
2,399,423	+		RR42_RS31310	0.74	+0.4
2,399,423	+		RR42_RS31310	0.74	+1.1
2,399,424	-		RR42_RS31310	0.74	+1.9
2,399,424	-		RR42_RS31310	0.74	-0.6
2,399,424	-		RR42_RS31310	0.74	-0.6
2,399,424	-		RR42_RS31310	0.74	+2.1
2,399,450	+		RR42_RS31310	0.75	+0.3
2,399,458	+		RR42_RS31310	0.75	+0.9
2,399,459	-		RR42_RS31310	0.75	-0.5
2,399,813	+		RR42_RS31310	0.88	+0.4
2,399,814	-		RR42_RS31310	0.88	-0.2
2,400,005	+				+0.8
2,400,006	-				+0.8
2,400,175	+				+0.1
2,400,176	-				-0.7
2,400,199	+				-0.8
2,400,199	+				+0.7
2,400,199	+				+0.3
2,400,200	-				-1.9
2,400,200	-				+2.6
2,400,200	-				-2.3
2,400,469	+		RR42_RS31315	0.17	-1.1
2,400,483	-		RR42_RS31315	0.18	-0.9
2,400,550	+		RR42_RS31315	0.22	-0.7
2,400,556	+		RR42_RS31315	0.22	-0.0
2,400,556	+		RR42_RS31315	0.22	+1.2
2,400,557	-		RR42_RS31315	0.22	-0.8
2,400,589	+		RR42_RS31315	0.24	-0.4
2,400,885	-		RR42_RS31315	0.41	-0.7
2,400,885	-		RR42_RS31315	0.41	-1.9
2,400,885	-		RR42_RS31315	0.41	-0.2
2,400,886	+				+0.5
2,400,886	+		RR42_RS31315	0.41	+2.0
2,400,887	-		RR42_RS31315	0.42	-0.9
2,400,887	-		RR42_RS31315	0.42	-0.3
2,400,887	-		RR42_RS31315	0.42	+0.8
2,401,006	+		RR42_RS31315	0.48	+0.2
2,401,006	+		RR42_RS31315	0.48	-0.8
2,401,007	-		RR42_RS31315	0.49	-1.2
2,401,012	+		RR42_RS31315	0.49	+0.8
2,401,012	+		RR42_RS31315	0.49	+0.2
2,401,012	+		RR42_RS31315	0.49	-0.0
2,401,013	-		RR42_RS31315	0.49	-0.1
2,401,013	-		RR42_RS31315	0.49	-1.3
2,401,013	-		RR42_RS31315	0.49	-0.3
2,401,013	-		RR42_RS31315	0.49	-0.4
2,401,013	-		RR42_RS31315	0.49	+0.4
2,401,013	-		RR42_RS31315	0.49	-0.1
2,401,087	+		RR42_RS31315	0.53	+0.4
2,401,106	+		RR42_RS31315	0.54	-0.7
2,401,292	-		RR42_RS31315	0.65	-0.9
2,401,292	-		RR42_RS31315	0.65	+0.7
2,401,605	+		RR42_RS31315	0.84	-0.3
2,401,605	+		RR42_RS31315	0.84	+0.2
2,401,606	-		RR42_RS31315	0.84	-1.5
2,401,621	+		RR42_RS31315	0.84	-0.6
2,401,639	+		RR42_RS31315	0.85	+0.6
2,401,640	-		RR42_RS31315	0.86	-1.4
2,401,640	-		RR42_RS31315	0.86	+0.2
2,401,941	+				+0.8
2,401,941	+				-0.2
2,402,043	+				-0.3
2,402,043	+				+0.4
2,402,043	+				-0.0
2,402,156	+				+1.1
2,402,156	+				-1.9
2,402,157	-				-1.1
2,402,157	-				+0.1
2,402,157	-				+0.7
2,402,157	-				+0.6
2,402,325	-		RR42_RS31320	0.17	+0.8
2,402,396	+		RR42_RS31320	0.23	-0.8
2,402,396	+		RR42_RS31320	0.23	+0.2
2,402,396	+		RR42_RS31320	0.23	-0.4
2,402,396	+		RR42_RS31320	0.23	+1.5
2,402,396	+		RR42_RS31320	0.23	-0.5
2,402,396	+		RR42_RS31320	0.23	-1.5
2,402,396	+		RR42_RS31320	0.23	-1.0
2,402,397	-		RR42_RS31320	0.23	-1.9
2,402,397	-		RR42_RS31320	0.23	-1.5
2,402,397	-		RR42_RS31320	0.23	-0.8
2,402,397	-		RR42_RS31320	0.23	+0.7
2,402,462	+		RR42_RS31320	0.28	+0.6
2,402,467	-		RR42_RS31320	0.28	+2.1
2,402,467	-		RR42_RS31320	0.28	-1.1
2,402,730	-		RR42_RS31320	0.48	-0.7
2,402,741	+		RR42_RS31320	0.49	+0.8
2,402,780	+		RR42_RS31320	0.52	-0.8
2,402,780	+		RR42_RS31320	0.52	+0.4
2,402,780	+		RR42_RS31320	0.52	-1.3
2,402,780	+		RR42_RS31320	0.52	+0.3
2,402,781	-		RR42_RS31320	0.52	+1.0
2,402,781	-		RR42_RS31320	0.52	+0.2
2,402,837	+		RR42_RS31320	0.56	+0.5
2,402,837	+		RR42_RS31320	0.56	-1.3
2,402,837	+		RR42_RS31320	0.56	+0.5