Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30765

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS30760 and RR42_RS30765 are separated by 577 nucleotidesRR42_RS30765 and RR42_RS30770 are separated by 73 nucleotides RR42_RS30760: RR42_RS30760 - 16S ribosomal RNA, at 2,279,398 to 2,280,971 _RS30760 RR42_RS30765: RR42_RS30765 - tRNA-Arg, at 2,281,549 to 2,281,625 _RS30765 RR42_RS30770: RR42_RS30770 - hypothetical protein, at 2,281,699 to 2,282,478 _RS30770 Position (kb) 2281 2282Strain fitness (log2 ratio) -1 0 1at 2281.224 kb on + strandat 2281.258 kb on + strandat 2281.288 kb on - strandat 2281.379 kb on + strandat 2281.379 kb on + strandat 2281.379 kb on + strandat 2281.380 kb on - strandat 2281.380 kb on - strandat 2281.420 kb on - strandat 2281.599 kb on + strand, within RR42_RS30765at 2281.701 kb on - strandat 2281.904 kb on + strand, within RR42_RS30770at 2281.905 kb on - strand, within RR42_RS30770at 2281.905 kb on - strand, within RR42_RS30770at 2282.056 kb on + strand, within RR42_RS30770at 2282.056 kb on + strand, within RR42_RS30770at 2282.083 kb on + strand, within RR42_RS30770at 2282.083 kb on + strand, within RR42_RS30770at 2282.084 kb on - strand, within RR42_RS30770at 2282.247 kb on + strand, within RR42_RS30770at 2282.248 kb on - strand, within RR42_RS30770at 2282.280 kb on + strand, within RR42_RS30770at 2282.280 kb on + strand, within RR42_RS30770at 2282.281 kb on - strand, within RR42_RS30770at 2282.281 kb on - strand, within RR42_RS30770

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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2,281,224 + -0.5
2,281,258 + +1.2
2,281,288 - +1.4
2,281,379 + -0.2
2,281,379 + +0.1
2,281,379 + -0.6
2,281,380 - +0.6
2,281,380 - +1.0
2,281,420 - -0.1
2,281,599 + RR42_RS30765 0.65 +0.7
2,281,701 - -1.0
2,281,904 + RR42_RS30770 0.26 -0.1
2,281,905 - RR42_RS30770 0.26 -0.2
2,281,905 - RR42_RS30770 0.26 -0.0
2,282,056 + RR42_RS30770 0.46 +0.8
2,282,056 + RR42_RS30770 0.46 -0.2
2,282,083 + RR42_RS30770 0.49 -1.0
2,282,083 + RR42_RS30770 0.49 -0.2
2,282,084 - RR42_RS30770 0.49 -1.5
2,282,247 + RR42_RS30770 0.70 +1.0
2,282,248 - RR42_RS30770 0.70 +0.5
2,282,280 + RR42_RS30770 0.74 -1.2
2,282,280 + RR42_RS30770 0.74 +0.1
2,282,281 - RR42_RS30770 0.75 +0.2
2,282,281 - RR42_RS30770 0.75 -1.0

Or see this region's nucleotide sequence