Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30180

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
2,145,112	-		RR42_RS30175	0.63	+0.3
2,145,112	-		RR42_RS30175	0.63	-1.4
2,145,201	+		RR42_RS30175	0.68	+2.5
2,145,201	+		RR42_RS30175	0.68	-0.4
2,145,202	-		RR42_RS30175	0.68	+0.3
2,145,222	+		RR42_RS30175	0.69	-0.0
2,145,223	-		RR42_RS30175	0.69	-0.4
2,145,223	-		RR42_RS30175	0.69	+0.9
2,145,510	-		RR42_RS30175	0.82	-0.1
2,145,707	+				-1.0
2,145,707	+				+0.3
2,145,708	-				-0.8
2,145,708	-				-0.4
2,146,407	+		RR42_RS30180	0.31	+0.4
2,146,557	+		RR42_RS30180	0.41	+0.9
2,146,570	-		RR42_RS30180	0.42	+0.5
2,146,761	+		RR42_RS30180	0.56	-0.1
2,146,762	-		RR42_RS30180	0.56	-0.1
2,146,762	-		RR42_RS30180	0.56	-0.3
2,146,762	-		RR42_RS30180	0.56	+0.6
2,146,762	-		RR42_RS30180	0.56	+0.1
2,146,762	-		RR42_RS30180	0.56	+0.7
2,146,762	-		RR42_RS30180	0.56	+0.3
2,146,937	-		RR42_RS30180	0.68	+0.3
2,146,938	+		RR42_RS30180	0.68	-1.1
2,146,939	-		RR42_RS30180	0.68	-0.2
2,146,959	+		RR42_RS30180	0.69	+0.9
2,147,082	+		RR42_RS30180	0.78	+1.9
2,147,082	+		RR42_RS30180	0.78	+0.7
2,147,092	-		RR42_RS30180	0.79	+2.5
2,147,127	+		RR42_RS30180	0.81	-1.1
2,147,147	+		RR42_RS30180	0.83	-0.0
2,147,221	-		RR42_RS30180	0.88	-0.9
2,147,223	+		RR42_RS30180	0.88	-0.3
2,147,223	+		RR42_RS30180	0.88	-0.2
2,147,223	+		RR42_RS30180	0.88	-0.3
2,147,223	+		RR42_RS30180	0.88	+2.9
2,147,224	-		RR42_RS30180	0.88	-1.1
2,147,226	+		RR42_RS30180	0.88	+0.2
2,147,226	+		RR42_RS30180	0.88	-1.3
2,147,227	-		RR42_RS30180	0.88	-0.4
2,147,227	-		RR42_RS30180	0.88	-0.9
2,147,235	+		RR42_RS30180	0.89	+0.3
2,147,235	+		RR42_RS30180	0.89	+0.0
2,147,236	-		RR42_RS30180	0.89	-1.0
2,147,236	-		RR42_RS30180	0.89	-0.4
2,147,394	+				-0.5
2,147,394	+				+0.5
2,147,394	+				-1.1
2,147,394	+				+0.3
2,147,395	-				+0.5
2,147,428	-				+1.9
2,147,429	+				+1.2
2,147,429	+				-0.1
2,147,430	-				-0.9
2,147,433	+				+1.2
2,147,434	-				-1.3
2,147,534	-				-0.4
2,147,536	+				+0.5
2,147,536	+				-0.1
2,147,537	-				+0.3
2,147,539	+				-0.5
2,147,540	-				-1.0
2,147,614	+				-0.9
2,147,615	-				+0.1
2,147,631	+				+2.5
2,147,688	+				+0.9
2,147,688	+				-0.5
2,147,763	+				+0.5
2,147,867	+		RR42_RS30185	0.26	+0.0
2,147,868	-		RR42_RS30185	0.26	-0.4
2,147,990	+		RR42_RS30185	0.45	+0.2
2,148,002	+		RR42_RS30185	0.47	+1.5
2,148,002	+		RR42_RS30185	0.47	-1.4
2,148,194	+		RR42_RS30185	0.78	+0.3
2,148,194	+		RR42_RS30185	0.78	+1.2
2,148,195	-		RR42_RS30185	0.78	-1.2
2,148,224	+		RR42_RS30185	0.83	+0.0
2,148,225	-		RR42_RS30185	0.83	+0.0
2,148,248	+		RR42_RS30185	0.87	+2.5