Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29905

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
2,074,951	+		RR42_RS29900	0.25	+0.5
2,074,951	+		RR42_RS29900	0.25	-0.5
2,074,952	-		RR42_RS29900	0.25	+1.9
2,074,952	-		RR42_RS29900	0.25	+0.2
2,074,952	-		RR42_RS29900	0.25	+0.7
2,074,952	-		RR42_RS29900	0.25	+0.4
2,074,965	+		RR42_RS29900	0.26	-0.4
2,075,197	+		RR42_RS29900	0.45	+0.5
2,075,197	+		RR42_RS29900	0.45	+1.2
2,075,197	+		RR42_RS29900	0.45	+0.3
2,075,197	+		RR42_RS29900	0.45	-0.3
2,075,197	+		RR42_RS29900	0.45	-0.1
2,075,197	+		RR42_RS29900	0.45	-0.4
2,075,197	+		RR42_RS29900	0.45	+0.4
2,075,197	+		RR42_RS29900	0.45	-0.7
2,075,197	+		RR42_RS29900	0.45	+0.3
2,075,197	+		RR42_RS29900	0.45	-0.7
2,075,198	-		RR42_RS29900	0.45	+0.5
2,075,198	-		RR42_RS29900	0.45	-0.8
2,075,198	-		RR42_RS29900	0.45	+1.0
2,075,257	+		RR42_RS29900	0.50	+1.5
2,075,257	+		RR42_RS29900	0.50	-0.7
2,075,257	+		RR42_RS29900	0.50	-0.0
2,075,257	+		RR42_RS29900	0.50	+0.1
2,075,257	+		RR42_RS29900	0.50	-1.1
2,075,258	-		RR42_RS29900	0.50	+0.5
2,075,266	-		RR42_RS29900	0.51	-1.7
2,075,266	-		RR42_RS29900	0.51	+0.0
2,075,317	+		RR42_RS29900	0.55	-2.1
2,075,378	-		RR42_RS29900	0.60	+1.3
2,075,414	+		RR42_RS29900	0.63	+0.7
2,075,465	+		RR42_RS29900	0.67	-1.8
2,075,514	-		RR42_RS29900	0.71	+0.2
2,075,606	+		RR42_RS29900	0.79	-0.1
2,075,727	+		RR42_RS29900	0.89	-0.6
2,075,728	-		RR42_RS29900	0.89	+1.3
2,075,756	-				+0.3
2,075,871	-				-0.5
2,075,871	-				+1.9
2,075,897	+				+0.1
2,075,897	+				-0.9
2,075,897	+				-0.8
2,075,897	+				+0.5
2,075,897	+				-0.0
2,075,937	+				-0.4
2,076,004	+				+1.9
2,076,004	+				+0.0
2,076,084	+		RR42_RS29905	0.16	-0.1
2,076,084	+		RR42_RS29905	0.16	+0.6
2,076,085	-		RR42_RS29905	0.16	+0.2
2,076,091	+		RR42_RS29905	0.17	+0.0
2,076,097	+		RR42_RS29905	0.18	+1.9
2,076,098	-		RR42_RS29905	0.18	+0.3
2,076,195	-		RR42_RS29905	0.27	-0.4
2,076,261	-		RR42_RS29905	0.34	-1.3
2,076,261	-		RR42_RS29905	0.34	+0.3
2,076,369	+		RR42_RS29905	0.45	-0.3
2,076,369	+		RR42_RS29905	0.45	+0.8
2,076,394	+		RR42_RS29905	0.48	+1.7
2,076,394	+		RR42_RS29905	0.48	-0.2
2,076,394	+		RR42_RS29905	0.48	-0.7
2,076,395	-		RR42_RS29905	0.48	-1.6
2,076,395	-		RR42_RS29905	0.48	+0.3
2,076,395	-		RR42_RS29905	0.48	+0.5
2,076,449	-				+1.3
2,076,449	-		RR42_RS29905	0.53	+1.8
2,076,449	-		RR42_RS29905	0.53	-1.6
2,076,452	-		RR42_RS29905	0.53	-0.6
2,076,452	-		RR42_RS29905	0.53	-0.8
2,076,648	+		RR42_RS29905	0.73	+0.8
2,076,649	-		RR42_RS29905	0.73	-1.3
2,076,700	+		RR42_RS29905	0.79	+0.4
2,076,908	+				-0.5
2,076,986	+				-1.5
2,076,986	+				+0.1
2,076,986	+				-0.0
2,076,987	-				-0.1
2,076,987	-				-2.5
2,076,987	-				-1.4
2,077,024	+				+1.4
2,077,025	-				+0.6
2,077,172	+		RR42_RS29910	0.13	+0.8
2,077,172	+		RR42_RS29910	0.13	-0.4
2,077,173	-		RR42_RS29910	0.13	+0.3
2,077,173	-		RR42_RS29910	0.13	+0.3
2,077,173	-		RR42_RS29910	0.13	-0.0
2,077,173	-		RR42_RS29910	0.13	+0.3
2,077,260	-		RR42_RS29910	0.22	-0.9
2,077,277	-		RR42_RS29910	0.23	+1.2
2,077,281	+		RR42_RS29910	0.24	-0.4
2,077,282	-		RR42_RS29910	0.24	-0.1
2,077,308	-		RR42_RS29910	0.26	+1.2
2,077,308	-		RR42_RS29910	0.26	-0.6
2,077,308	-		RR42_RS29910	0.26	+0.0
2,077,317	+		RR42_RS29910	0.27	+0.3
2,077,318	-		RR42_RS29910	0.27	+0.3
2,077,353	+		RR42_RS29910	0.31	-0.1
2,077,353	+		RR42_RS29910	0.31	-0.4
2,077,353	+		RR42_RS29910	0.31	+1.2
2,077,354	-		RR42_RS29910	0.31	-0.4
2,077,354	-		RR42_RS29910	0.31	-0.3
2,077,403	-		RR42_RS29910	0.36	-1.1
2,077,460	+		RR42_RS29910	0.41	-0.1
2,077,461	-		RR42_RS29910	0.41	+0.1
2,077,467	+		RR42_RS29910	0.42	-1.1
2,077,468	-		RR42_RS29910	0.42	-2.0
2,077,492	+		RR42_RS29910	0.44	-0.6
2,077,492	+		RR42_RS29910	0.44	-0.1
2,077,493	-		RR42_RS29910	0.44	-0.3
2,077,547	+		RR42_RS29910	0.50	-2.4
2,077,548	-		RR42_RS29910	0.50	+1.3
2,077,597	-		RR42_RS29910	0.55	-0.7
2,077,696	+		RR42_RS29910	0.64	+0.2
2,077,697	+		RR42_RS29910	0.64	-0.3
2,077,698	-		RR42_RS29910	0.65	-0.2
2,077,744	+		RR42_RS29910	0.69	+0.1
2,077,745	-		RR42_RS29910	0.69	-0.3
2,077,786	-		RR42_RS29910	0.73	-0.2
2,077,868	-		RR42_RS29910	0.81	+1.5