Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29630

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
2,015,557	+		RR42_RS29625	0.55	+0.6
2,015,557	+		RR42_RS29625	0.55	+0.2
2,015,558	-		RR42_RS29625	0.55	+0.3
2,015,627	+		RR42_RS29625	0.63	+0.7
2,015,627	+		RR42_RS29625	0.63	-1.6
2,015,627	+		RR42_RS29625	0.63	-1.5
2,015,627	+		RR42_RS29625	0.63	-0.5
2,015,627	+		RR42_RS29625	0.63	+0.9
2,015,628	-		RR42_RS29625	0.63	-1.2
2,015,628	-		RR42_RS29625	0.63	+0.3
2,015,628	-		RR42_RS29625	0.63	-1.0
2,015,628	-		RR42_RS29625	0.63	-0.4
2,015,628	-		RR42_RS29625	0.63	+0.2
2,015,628	-		RR42_RS29625	0.63	-1.2
2,015,628	-		RR42_RS29625	0.63	+0.7
2,015,723	+		RR42_RS29625	0.74	-2.2
2,015,723	+		RR42_RS29625	0.74	-0.6
2,015,723	+		RR42_RS29625	0.74	-0.5
2,015,723	+		RR42_RS29625	0.74	-0.9
2,015,723	+		RR42_RS29625	0.74	+1.6
2,015,724	-		RR42_RS29625	0.74	+2.4
2,015,724	-		RR42_RS29625	0.74	+0.1
2,015,724	-		RR42_RS29625	0.74	-0.1
2,015,724	-		RR42_RS29625	0.74	-0.1
2,015,724	-		RR42_RS29625	0.74	-0.7
2,015,724	-		RR42_RS29625	0.74	+0.9
2,015,724	-		RR42_RS29625	0.74	+0.3
2,015,754	+		RR42_RS29625	0.77	+0.3
2,015,754	+		RR42_RS29625	0.77	-0.8
2,015,755	-		RR42_RS29625	0.77	+1.3
2,015,755	-		RR42_RS29625	0.77	+0.3
2,015,787	+		RR42_RS29625	0.81	-0.9
2,015,787	+		RR42_RS29625	0.81	+0.0
2,015,788	-		RR42_RS29625	0.81	+1.9
2,015,788	-		RR42_RS29625	0.81	+0.6
2,015,863	-		RR42_RS29625	0.89	+0.4
2,015,863	-		RR42_RS29625	0.89	-1.3
2,015,863	-		RR42_RS29625	0.89	-0.2
2,015,863	-		RR42_RS29625	0.89	+1.1
2,015,863	-		RR42_RS29625	0.89	-0.9
2,015,863	-		RR42_RS29625	0.89	-0.1
2,015,864	+		RR42_RS29625	0.89	+0.6
2,015,864	+		RR42_RS29625	0.89	-0.2
2,015,864	+		RR42_RS29625	0.89	+1.6
2,015,864	+		RR42_RS29625	0.89	-0.2
2,015,875	+				-0.5
2,015,875	+				+2.6
2,015,875	+				+0.9
2,015,876	-				-0.3
2,015,876	-				+1.9
2,015,876	-				-1.1
2,015,958	-				-0.1
2,015,996	+				+0.3
2,015,996	+				-0.7
2,015,997	-				-0.1
2,015,997	-				-0.2
2,015,997	-				+0.8
2,015,997	-				+0.5
2,015,997	-				-0.0
2,015,997	-				-1.5
2,015,997	-				+0.3
2,015,997	-				+0.9
2,016,012	+				+0.1
2,016,012	+				-0.4
2,016,030	+				+0.3
2,016,030	+				+0.6
2,016,033	+				-0.5
2,016,034	-				+0.1
2,016,034	-				-1.1
2,016,034	-				-0.3
2,016,034	-				+1.9
2,016,034	-				+0.4
2,016,044	+				-0.7
2,016,044	+				+0.8
2,016,044	+				-0.3
2,016,045	-				+0.5
2,016,056	+				+0.0
2,016,056	+				+0.3
2,016,056	+				-0.4
2,016,056	+				-1.4
2,016,184	+				-0.1
2,016,184	+				+0.3
2,016,184	+				-0.6
2,016,185	-				+1.0
2,016,269	-				+1.0
2,016,269	-				-0.2
2,016,284	-				+0.6
2,016,296	+				+1.1
2,016,340	+				+0.6
2,016,341	-				+1.6
2,016,394	+				+0.1
2,016,415	-				-0.4
2,016,415	-				+0.1
2,016,439	+				-0.3
2,016,450	+				+0.2
2,016,450	+				+1.4
2,016,451	-				-0.1
2,016,532	+				+0.3
2,016,532	+				+0.5
2,016,580	+		RR42_RS29630	0.22	-1.6
2,016,580	+		RR42_RS29630	0.22	+0.3
2,016,610	+		RR42_RS29630	0.33	-1.2
2,016,611	-		RR42_RS29630	0.33	-1.1
2,016,670	-		RR42_RS29630	0.53	-0.2
2,016,734	-		RR42_RS29630	0.75	-1.9
2,016,810	-				-0.8
2,016,822	+				-1.3
2,016,822	+				-0.6
2,016,823	-				+0.3
2,017,191	+		RR42_RS29635	0.48	-1.9
2,017,191	+		RR42_RS29635	0.48	-1.1
2,017,191	+		RR42_RS29635	0.48	+1.1
2,017,191	+		RR42_RS29635	0.48	+1.3
2,017,191	+		RR42_RS29635	0.48	+2.2
2,017,191	+		RR42_RS29635	0.48	-0.3
2,017,191	+		RR42_RS29635	0.48	-0.1
2,017,192	-		RR42_RS29635	0.48	-0.0
2,017,287	+		RR42_RS29635	0.61	+0.9
2,017,287	+		RR42_RS29635	0.61	-2.0
2,017,288	-		RR42_RS29635	0.61	-1.0
2,017,389	+		RR42_RS29635	0.74	+0.6
2,017,389	+		RR42_RS29635	0.74	+1.9
2,017,390	-		RR42_RS29635	0.74	+0.6
2,017,390	-		RR42_RS29635	0.74	+0.9
2,017,420	+		RR42_RS29635	0.78	+0.0
2,017,603	-				-1.0
2,017,608	+				+0.9
2,017,625	+				-0.7
2,017,625	+				+0.5
2,017,626	-				+0.4