Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS29090 and RR42_RS29095 are separated by 281 nucleotides RR42_RS29095 and RR42_RS29100 are separated by 33 nucleotides
RR42_RS29090: RR42_RS29090 - galactarate dehydrogenase, at 1,882,688 to 1,884,226
_RS29090
RR42_RS29095: RR42_RS29095 - XRE family transcriptional regulator, at 1,884,508 to 1,884,849
_RS29095
RR42_RS29100: RR42_RS29100 - phosphatidylinositol kinase, at 1,884,883 to 1,886,112
_RS29100
Position (kb) 1884
1885 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 1883.708 kb on + strand, within RR42_RS29090 at 1883.914 kb on + strand, within RR42_RS29090 at 1883.984 kb on + strand, within RR42_RS29090 at 1883.985 kb on - strand, within RR42_RS29090 at 1884.025 kb on + strand, within RR42_RS29090 at 1884.178 kb on + strand at 1884.178 kb on + strand at 1884.178 kb on + strand at 1884.178 kb on + strand at 1884.178 kb on + strand at 1884.178 kb on + strand at 1884.179 kb on - strand at 1884.179 kb on - strand at 1884.179 kb on - strand at 1884.179 kb on - strand at 1884.304 kb on - strand at 1884.410 kb on + strand at 1884.411 kb on - strand at 1884.457 kb on - strand at 1884.544 kb on - strand, within RR42_RS29095 at 1884.544 kb on - strand, within RR42_RS29095 at 1884.544 kb on - strand, within RR42_RS29095 at 1884.656 kb on - strand, within RR42_RS29095 at 1884.707 kb on - strand, within RR42_RS29095 at 1884.718 kb on - strand, within RR42_RS29095 at 1884.718 kb on - strand, within RR42_RS29095 at 1884.989 kb on - strand at 1885.190 kb on - strand, within RR42_RS29100 at 1885.249 kb on - strand, within RR42_RS29100 at 1885.275 kb on + strand, within RR42_RS29100 at 1885.275 kb on + strand, within RR42_RS29100 at 1885.276 kb on - strand, within RR42_RS29100 at 1885.280 kb on - strand, within RR42_RS29100 at 1885.755 kb on + strand, within RR42_RS29100 at 1885.756 kb on - strand, within RR42_RS29100 at 1885.756 kb on - strand, within RR42_RS29100 at 1885.756 kb on - strand, within RR42_RS29100 at 1885.759 kb on + strand, within RR42_RS29100 at 1885.759 kb on + strand, within RR42_RS29100 at 1885.759 kb on + strand, within RR42_RS29100 at 1885.760 kb on - strand, within RR42_RS29100 at 1885.767 kb on + strand, within RR42_RS29100 at 1885.767 kb on + strand, within RR42_RS29100 at 1885.768 kb on - strand, within RR42_RS29100 at 1885.768 kb on - strand, within RR42_RS29100 at 1885.826 kb on + strand, within RR42_RS29100 at 1885.826 kb on + strand, within RR42_RS29100 at 1885.827 kb on - strand, within RR42_RS29100 at 1885.827 kb on - strand, within RR42_RS29100 at 1885.827 kb on - strand, within RR42_RS29100
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 1,883,708 + RR42_RS29090 0.66 -0.8 1,883,914 + RR42_RS29090 0.80 -0.7 1,883,984 + RR42_RS29090 0.84 +1.1 1,883,985 - RR42_RS29090 0.84 +0.9 1,884,025 + RR42_RS29090 0.87 +0.4 1,884,178 + +1.1 1,884,178 + -2.5 1,884,178 + -0.7 1,884,178 + +0.6 1,884,178 + -0.6 1,884,178 + -0.1 1,884,179 - +1.3 1,884,179 - +0.5 1,884,179 - +0.8 1,884,179 - -1.3 1,884,304 - -0.1 1,884,410 + -0.9 1,884,411 - +0.9 1,884,457 - +0.7 1,884,544 - RR42_RS29095 0.11 -0.4 1,884,544 - RR42_RS29095 0.11 +0.5 1,884,544 - RR42_RS29095 0.11 +1.0 1,884,656 - RR42_RS29095 0.43 +0.6 1,884,707 - RR42_RS29095 0.58 -0.1 1,884,718 - RR42_RS29095 0.61 -0.0 1,884,718 - RR42_RS29095 0.61 +12.1 1,884,989 - +0.7 1,885,190 - RR42_RS29100 0.25 -0.6 1,885,249 - RR42_RS29100 0.30 -1.8 1,885,275 + RR42_RS29100 0.32 +0.6 1,885,275 + RR42_RS29100 0.32 -0.3 1,885,276 - RR42_RS29100 0.32 -0.4 1,885,280 - RR42_RS29100 0.32 -2.6 1,885,755 + RR42_RS29100 0.71 -2.1 1,885,756 - RR42_RS29100 0.71 -1.0 1,885,756 - RR42_RS29100 0.71 +0.4 1,885,756 - RR42_RS29100 0.71 +0.1 1,885,759 + RR42_RS29100 0.71 +0.3 1,885,759 + RR42_RS29100 0.71 +0.9 1,885,759 + RR42_RS29100 0.71 +0.5 1,885,760 - RR42_RS29100 0.71 +0.9 1,885,767 + RR42_RS29100 0.72 +0.3 1,885,767 + RR42_RS29100 0.72 -0.7 1,885,768 - RR42_RS29100 0.72 +0.6 1,885,768 - RR42_RS29100 0.72 +0.4 1,885,826 + RR42_RS29100 0.77 -1.4 1,885,826 + RR42_RS29100 0.77 +0.4 1,885,827 - RR42_RS29100 0.77 +0.3 1,885,827 - RR42_RS29100 0.77 +2.3 1,885,827 - RR42_RS29100 0.77 +0.9
Or see this region's nucleotide sequence