Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29080

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
1,878,851	+		RR42_RS29075	0.15	+0.5
1,878,851	+		RR42_RS29075	0.15	-0.4
1,878,851	+		RR42_RS29075	0.15	+0.2
1,878,852	-		RR42_RS29075	0.15	-1.6
1,878,852	-		RR42_RS29075	0.15	+0.2
1,878,852	-		RR42_RS29075	0.15	+0.7
1,878,918	+		RR42_RS29075	0.22	-1.2
1,879,038	+		RR42_RS29075	0.35	+1.9
1,879,039	-		RR42_RS29075	0.35	+0.1
1,879,075	-		RR42_RS29075	0.38	+0.9
1,879,110	+		RR42_RS29075	0.42	-0.6
1,879,110	+		RR42_RS29075	0.42	+0.7
1,879,110	+		RR42_RS29075	0.42	-0.4
1,879,111	-		RR42_RS29075	0.42	-1.5
1,879,111	-		RR42_RS29075	0.42	+0.5
1,879,111	-		RR42_RS29075	0.42	-0.1
1,879,112	+		RR42_RS29075	0.42	+0.4
1,879,530	+		RR42_RS29075	0.86	+0.2
1,879,530	+		RR42_RS29075	0.86	+0.2
1,879,530	+		RR42_RS29075	0.86	+0.9
1,879,530	+		RR42_RS29075	0.86	-1.0
1,879,531	-		RR42_RS29075	0.86	-0.5
1,879,531	-		RR42_RS29075	0.86	-0.1
1,879,531	-		RR42_RS29075	0.86	-0.9
1,879,531	-		RR42_RS29075	0.86	+0.2
1,879,665	+				+0.2
1,879,991	+		RR42_RS29080	0.25	-0.4
1,880,027	-		RR42_RS29080	0.29	+0.1
1,880,039	+		RR42_RS29080	0.31	+0.9
1,880,040	-		RR42_RS29080	0.31	+0.6
1,880,063	+		RR42_RS29080	0.33	+0.1
1,880,075	+		RR42_RS29080	0.35	+0.9
1,880,076	-		RR42_RS29080	0.35	-0.4
1,880,105	+		RR42_RS29080	0.38	+1.7
1,880,250	-		RR42_RS29080	0.54	-1.3
1,880,293	-		RR42_RS29080	0.58	+0.1
1,880,330	+		RR42_RS29080	0.62	-0.3
1,880,330	+		RR42_RS29080	0.62	+0.9
1,880,384	+		RR42_RS29080	0.68	-0.1
1,880,477	+		RR42_RS29080	0.78	-0.5
1,880,477	+		RR42_RS29080	0.78	+1.4
1,880,569	+		RR42_RS29080	0.89	-0.6
1,880,569	+		RR42_RS29080	0.89	-0.5
1,880,569	+		RR42_RS29080	0.89	+1.1
1,880,569	+		RR42_RS29080	0.89	+0.5
1,880,570	-		RR42_RS29080	0.89	+0.2
1,880,570	-		RR42_RS29080	0.89	-1.1
1,880,570	-		RR42_RS29080	0.89	-0.9
1,880,570	-		RR42_RS29080	0.89	+0.2
1,880,573	+		RR42_RS29080	0.89	+1.3
1,880,573	+		RR42_RS29080	0.89	-1.3
1,880,573	+		RR42_RS29080	0.89	+0.3
1,880,573	+		RR42_RS29080	0.89	+0.5
1,880,573	+		RR42_RS29080	0.89	-0.1
1,880,573	+		RR42_RS29080	0.89	-0.5
1,880,574	-		RR42_RS29080	0.89	+0.3
1,880,574	-		RR42_RS29080	0.89	-0.2
1,880,574	-		RR42_RS29080	0.89	-0.5
1,880,574	-		RR42_RS29080	0.89	-0.1
1,880,574	-		RR42_RS29080	0.89	-0.1
1,880,574	-		RR42_RS29080	0.89	+0.8
1,880,725	-				+0.6
1,880,725	-				-1.4
1,880,725	-				+0.3
1,880,790	+				-0.7
1,880,791	-				+1.9
1,880,844	-				+0.7
1,880,844	-				+1.1
1,881,083	+				+0.6
1,881,148	+				-0.9
1,881,155	+				+0.3
1,881,155	+				-0.3
1,881,211	+				+0.5
1,881,211	+				+1.9
1,881,212	-				-0.7
1,881,212	-				+0.0
1,881,212	-				+2.5
1,881,212	-				-1.6
1,881,299	+				-0.4
1,881,299	+				-0.1
1,881,300	-				+0.6
1,881,300	-				+0.0
1,881,300	-				+0.9
1,881,300	-				-0.6
1,881,300	-				+0.9
1,881,380	-		RR42_RS29085	0.13	-0.5
1,881,404	+		RR42_RS29085	0.15	-1.9
1,881,404	+		RR42_RS29085	0.15	+1.0
1,881,404	+		RR42_RS29085	0.15	+1.2
1,881,404	+		RR42_RS29085	0.15	-2.0
1,881,404	+		RR42_RS29085	0.15	-1.6
1,881,405	-		RR42_RS29085	0.15	+0.2
1,881,405	-		RR42_RS29085	0.15	-1.9
1,881,405	-		RR42_RS29085	0.15	-1.2
1,881,405	-		RR42_RS29085	0.15	+0.5
1,881,405	-		RR42_RS29085	0.15	-0.5
1,881,405	-		RR42_RS29085	0.15	-0.9
1,881,460	+		RR42_RS29085	0.19	+1.9
1,881,461	-		RR42_RS29085	0.19	+0.3
1,881,464	+		RR42_RS29085	0.20	+1.1
1,881,464	+		RR42_RS29085	0.20	-1.6
1,881,464	+		RR42_RS29085	0.20	-0.1
1,881,465	-		RR42_RS29085	0.20	-0.2
1,881,514	+		RR42_RS29085	0.23	+0.7
1,881,523	-		RR42_RS29085	0.24	+0.8
1,881,523	-		RR42_RS29085	0.24	+0.9