Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27570 and RR42_RS27575 are separated by 312 nucleotides RR42_RS27575 and RR42_RS27580 are separated by 85 nucleotides
RR42_RS27565: RR42_RS27565 - Holin-like protein CidA, at 1,550,671 to 1,551,099
_RS27565
RR42_RS27570: RR42_RS27570 - murein hydrolase effector protein, at 1,551,092 to 1,551,784
_RS27570
RR42_RS27575: RR42_RS27575 - arabinose transporter permease, at 1,552,097 to 1,553,254
_RS27575
RR42_RS27580: RR42_RS27580 - glutaminase, at 1,553,340 to 1,554,254
_RS27580
Position (kb)
1552
1553
1554 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1551.143 kb on + strand at 1551.144 kb on - strand at 1551.144 kb on - strand at 1551.146 kb on + strand at 1551.146 kb on + strand at 1551.147 kb on - strand at 1551.147 kb on - strand at 1551.164 kb on + strand, within RR42_RS27570 at 1551.165 kb on - strand, within RR42_RS27570 at 1551.165 kb on - strand, within RR42_RS27570 at 1551.261 kb on - strand, within RR42_RS27570 at 1551.783 kb on - strand at 1551.797 kb on - strand at 1551.797 kb on - strand at 1551.797 kb on - strand at 1551.854 kb on - strand at 1552.087 kb on + strand at 1552.105 kb on - strand at 1552.235 kb on + strand, within RR42_RS27575 at 1552.236 kb on - strand, within RR42_RS27575 at 1552.367 kb on + strand, within RR42_RS27575 at 1552.367 kb on + strand, within RR42_RS27575 at 1552.367 kb on + strand, within RR42_RS27575 at 1552.367 kb on + strand, within RR42_RS27575 at 1552.368 kb on - strand, within RR42_RS27575 at 1552.554 kb on + strand, within RR42_RS27575 at 1552.554 kb on + strand, within RR42_RS27575 at 1552.554 kb on + strand, within RR42_RS27575 at 1552.554 kb on + strand, within RR42_RS27575 at 1552.554 kb on + strand, within RR42_RS27575 at 1552.554 kb on + strand, within RR42_RS27575 at 1552.554 kb on + strand, within RR42_RS27575 at 1552.554 kb on + strand, within RR42_RS27575 at 1552.555 kb on - strand, within RR42_RS27575 at 1552.753 kb on + strand, within RR42_RS27575 at 1552.754 kb on - strand, within RR42_RS27575 at 1552.757 kb on + strand, within RR42_RS27575 at 1552.757 kb on + strand, within RR42_RS27575 at 1552.758 kb on - strand, within RR42_RS27575 at 1552.766 kb on + strand, within RR42_RS27575 at 1552.767 kb on - strand, within RR42_RS27575 at 1552.767 kb on - strand, within RR42_RS27575 at 1552.767 kb on - strand, within RR42_RS27575 at 1552.924 kb on - strand, within RR42_RS27575 at 1553.252 kb on + strand at 1553.252 kb on + strand at 1553.253 kb on - strand at 1553.255 kb on + strand at 1553.256 kb on - strand at 1553.304 kb on + strand at 1553.304 kb on + strand at 1553.304 kb on + strand at 1553.304 kb on + strand at 1553.305 kb on - strand at 1553.347 kb on - strand at 1553.415 kb on + strand at 1553.415 kb on + strand at 1553.415 kb on + strand at 1553.415 kb on + strand at 1553.416 kb on - strand at 1553.643 kb on + strand, within RR42_RS27580 at 1553.785 kb on - strand, within RR42_RS27580 at 1553.845 kb on - strand, within RR42_RS27580 at 1553.901 kb on + strand, within RR42_RS27580 at 1553.901 kb on + strand, within RR42_RS27580 at 1553.901 kb on + strand, within RR42_RS27580 at 1554.057 kb on + strand, within RR42_RS27580 at 1554.057 kb on + strand, within RR42_RS27580 at 1554.058 kb on - strand, within RR42_RS27580 at 1554.058 kb on - strand, within RR42_RS27580
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 1,551,143 + -0.1 1,551,144 - +0.1 1,551,144 - -0.3 1,551,146 + +1.5 1,551,146 + -1.7 1,551,147 - +1.1 1,551,147 - -0.0 1,551,164 + RR42_RS27570 0.10 +0.9 1,551,165 - RR42_RS27570 0.11 +1.3 1,551,165 - RR42_RS27570 0.11 +2.5 1,551,261 - RR42_RS27570 0.24 -0.0 1,551,783 - +0.2 1,551,797 - -0.8 1,551,797 - +0.3 1,551,797 - +0.1 1,551,854 - -0.1 1,552,087 + -0.8 1,552,105 - -0.6 1,552,235 + RR42_RS27575 0.12 +0.4 1,552,236 - RR42_RS27575 0.12 -1.1 1,552,367 + RR42_RS27575 0.23 +0.9 1,552,367 + RR42_RS27575 0.23 -1.4 1,552,367 + RR42_RS27575 0.23 -0.5 1,552,367 + RR42_RS27575 0.23 +0.9 1,552,368 - RR42_RS27575 0.23 -0.2 1,552,554 + RR42_RS27575 0.39 -0.1 1,552,554 + RR42_RS27575 0.39 -0.5 1,552,554 + RR42_RS27575 0.39 +0.1 1,552,554 + RR42_RS27575 0.39 -0.0 1,552,554 + RR42_RS27575 0.39 -0.3 1,552,554 + RR42_RS27575 0.39 -1.4 1,552,554 + RR42_RS27575 0.39 +1.0 1,552,554 + RR42_RS27575 0.39 -0.3 1,552,555 - RR42_RS27575 0.40 +0.1 1,552,753 + RR42_RS27575 0.57 -0.5 1,552,754 - RR42_RS27575 0.57 -0.8 1,552,757 + RR42_RS27575 0.57 -1.3 1,552,757 + RR42_RS27575 0.57 -0.2 1,552,758 - RR42_RS27575 0.57 +0.5 1,552,766 + RR42_RS27575 0.58 -0.9 1,552,767 - RR42_RS27575 0.58 -0.1 1,552,767 - RR42_RS27575 0.58 +0.1 1,552,767 - RR42_RS27575 0.58 -0.2 1,552,924 - RR42_RS27575 0.71 +1.4 1,553,252 + -0.8 1,553,252 + +0.3 1,553,253 - +0.3 1,553,255 + -0.7 1,553,256 - -0.3 1,553,304 + +0.6 1,553,304 + +1.4 1,553,304 + -0.0 1,553,304 + -1.1 1,553,305 - +1.5 1,553,347 - +0.5 1,553,415 + +0.3 1,553,415 + -0.1 1,553,415 + -0.4 1,553,415 + +1.2 1,553,416 - +1.1 1,553,643 + RR42_RS27580 0.33 -1.8 1,553,785 - RR42_RS27580 0.49 +1.6 1,553,845 - RR42_RS27580 0.55 +0.1 1,553,901 + RR42_RS27580 0.61 +0.2 1,553,901 + RR42_RS27580 0.61 -0.4 1,553,901 + RR42_RS27580 0.61 +0.0 1,554,057 + RR42_RS27580 0.78 -0.8 1,554,057 + RR42_RS27580 0.78 +0.4 1,554,058 - RR42_RS27580 0.78 +0.5 1,554,058 - RR42_RS27580 0.78 +0.5
Or see this region's nucleotide sequence