Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26975 and RR42_RS26980 are separated by 46 nucleotides RR42_RS26980 and RR42_RS26985 are separated by 156 nucleotides RR42_RS26985 and RR42_RS26990 overlap by 4 nucleotides
RR42_RS26975: RR42_RS26975 - MFS transporter, at 1,406,849 to 1,408,270
_RS26975
RR42_RS26980: RR42_RS26980 - hypothetical protein, at 1,408,317 to 1,408,730
_RS26980
RR42_RS26985: RR42_RS26985 - hypothetical protein, at 1,408,887 to 1,409,249
_RS26985
RR42_RS26990: RR42_RS26990 - membrane protein, at 1,409,246 to 1,410,892
_RS26990
Position (kb) 1408
1409
1410 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1408.001 kb on + strand, within RR42_RS26975 at 1408.002 kb on - strand, within RR42_RS26975 at 1408.061 kb on + strand, within RR42_RS26975 at 1408.061 kb on + strand, within RR42_RS26975 at 1408.061 kb on + strand, within RR42_RS26975 at 1408.062 kb on - strand, within RR42_RS26975 at 1408.062 kb on - strand, within RR42_RS26975 at 1408.062 kb on - strand, within RR42_RS26975 at 1408.062 kb on - strand, within RR42_RS26975 at 1408.268 kb on + strand at 1408.268 kb on + strand at 1408.268 kb on + strand at 1408.269 kb on - strand at 1408.471 kb on + strand, within RR42_RS26980 at 1408.471 kb on + strand, within RR42_RS26980 at 1408.471 kb on + strand, within RR42_RS26980 at 1408.471 kb on + strand, within RR42_RS26980 at 1408.471 kb on + strand, within RR42_RS26980 at 1408.471 kb on + strand, within RR42_RS26980 at 1408.472 kb on - strand, within RR42_RS26980 at 1408.472 kb on - strand, within RR42_RS26980 at 1408.472 kb on - strand, within RR42_RS26980 at 1408.472 kb on - strand, within RR42_RS26980 at 1408.493 kb on + strand, within RR42_RS26980 at 1408.493 kb on + strand, within RR42_RS26980 at 1408.699 kb on + strand at 1408.700 kb on - strand at 1408.911 kb on + strand at 1409.164 kb on + strand, within RR42_RS26985 at 1409.204 kb on + strand, within RR42_RS26985 at 1409.206 kb on + strand, within RR42_RS26985 at 1409.646 kb on + strand, within RR42_RS26990 at 1409.646 kb on + strand, within RR42_RS26990 at 1409.647 kb on - strand, within RR42_RS26990 at 1409.647 kb on - strand, within RR42_RS26990 at 1409.647 kb on - strand, within RR42_RS26990 at 1410.196 kb on - strand, within RR42_RS26990 at 1410.196 kb on - strand, within RR42_RS26990 at 1410.222 kb on + strand, within RR42_RS26990 at 1410.222 kb on + strand, within RR42_RS26990 at 1410.222 kb on + strand, within RR42_RS26990 at 1410.222 kb on + strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 1,408,001 + RR42_RS26975 0.81 -1.1 1,408,002 - RR42_RS26975 0.81 +0.1 1,408,061 + RR42_RS26975 0.85 +0.7 1,408,061 + RR42_RS26975 0.85 +1.7 1,408,061 + RR42_RS26975 0.85 -0.0 1,408,062 - RR42_RS26975 0.85 -1.1 1,408,062 - RR42_RS26975 0.85 -1.4 1,408,062 - RR42_RS26975 0.85 -1.5 1,408,062 - RR42_RS26975 0.85 -0.1 1,408,268 + +2.1 1,408,268 + +0.2 1,408,268 + +0.8 1,408,269 - -1.1 1,408,471 + RR42_RS26980 0.37 -0.7 1,408,471 + RR42_RS26980 0.37 +0.5 1,408,471 + RR42_RS26980 0.37 +0.2 1,408,471 + RR42_RS26980 0.37 -0.2 1,408,471 + RR42_RS26980 0.37 +2.4 1,408,471 + RR42_RS26980 0.37 +0.9 1,408,472 - RR42_RS26980 0.37 -0.3 1,408,472 - RR42_RS26980 0.37 +0.6 1,408,472 - RR42_RS26980 0.37 -0.3 1,408,472 - RR42_RS26980 0.37 +0.9 1,408,493 + RR42_RS26980 0.43 -0.9 1,408,493 + RR42_RS26980 0.43 +0.8 1,408,699 + -0.4 1,408,700 - -0.0 1,408,911 + -1.1 1,409,164 + RR42_RS26985 0.76 -0.8 1,409,204 + RR42_RS26985 0.87 -1.0 1,409,206 + RR42_RS26985 0.88 -1.8 1,409,646 + RR42_RS26990 0.24 -0.9 1,409,646 + RR42_RS26990 0.24 -0.9 1,409,647 - RR42_RS26990 0.24 -1.5 1,409,647 - RR42_RS26990 0.24 +0.2 1,409,647 - RR42_RS26990 0.24 +1.1 1,410,196 - RR42_RS26990 0.58 +0.5 1,410,196 - RR42_RS26990 0.58 +0.2 1,410,222 + RR42_RS26990 0.59 -1.4 1,410,222 + RR42_RS26990 0.59 -0.4 1,410,222 + RR42_RS26990 0.59 -0.9 1,410,222 + RR42_RS26990 0.59 -0.8 1,410,223 - RR42_RS26990 0.59 -0.2 1,410,223 - RR42_RS26990 0.59 +0.2 1,410,223 - RR42_RS26990 0.59 -0.8 1,410,223 - RR42_RS26990 0.59 +0.1 1,410,223 - RR42_RS26990 0.59 -0.6
Or see this region's nucleotide sequence