Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26715 and RR42_RS26720 overlap by 97 nucleotides RR42_RS26720 and RR42_RS26725 overlap by 44 nucleotides RR42_RS26725 and RR42_RS26730 are separated by 7 nucleotides RR42_RS26730 and RR42_RS26735 are separated by 29 nucleotides RR42_RS26735 and RR42_RS26740 are separated by 28 nucleotides
RR42_RS26715: RR42_RS26715 - sulfonate ABC transporter substrate-binding protein, at 1,350,850 to 1,351,818
_RS26715
RR42_RS26720: RR42_RS26720 - hypothetical protein, at 1,351,722 to 1,351,940
_RS26720
RR42_RS26725: RR42_RS26725 - diguanylate cyclase, at 1,351,897 to 1,352,634
_RS26725
RR42_RS26730: RR42_RS26730 - Fe-S oxidoreductase, at 1,352,642 to 1,353,031
_RS26730
RR42_RS26735: RR42_RS26735 - hypothetical protein, at 1,353,061 to 1,353,630
_RS26735
RR42_RS26740: RR42_RS26740 - protein serine/threonine phosphatase, at 1,353,659 to 1,354,894
_RS26740
Position (kb)
1352
1353
1354 Strain fitness (log2 ratio)
-1
0
1
2 at 1351.723 kb on + strand at 1351.723 kb on + strand at 1351.723 kb on + strand at 1351.723 kb on + strand at 1351.970 kb on + strand at 1351.994 kb on + strand, within RR42_RS26725 at 1352.249 kb on - strand, within RR42_RS26725 at 1352.476 kb on + strand, within RR42_RS26725 at 1352.647 kb on + strand at 1352.742 kb on + strand, within RR42_RS26730 at 1352.835 kb on + strand, within RR42_RS26730 at 1352.836 kb on - strand, within RR42_RS26730 at 1352.886 kb on + strand, within RR42_RS26730 at 1352.917 kb on - strand, within RR42_RS26730 at 1353.125 kb on + strand, within RR42_RS26735 at 1353.413 kb on + strand, within RR42_RS26735 at 1353.413 kb on + strand, within RR42_RS26735 at 1353.554 kb on + strand, within RR42_RS26735 at 1353.555 kb on - strand, within RR42_RS26735 at 1353.602 kb on + strand at 1353.622 kb on - strand at 1353.639 kb on + strand at 1353.640 kb on - strand at 1353.642 kb on - strand at 1353.661 kb on - strand at 1353.726 kb on + strand at 1353.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 1,351,723 + -1.3 1,351,723 + +0.1 1,351,723 + +2.7 1,351,723 + -0.4 1,351,970 + +1.2 1,351,994 + RR42_RS26725 0.13 -1.3 1,352,249 - RR42_RS26725 0.48 +0.3 1,352,476 + RR42_RS26725 0.78 -0.7 1,352,647 + -0.1 1,352,742 + RR42_RS26730 0.26 -1.3 1,352,835 + RR42_RS26730 0.49 -1.1 1,352,836 - RR42_RS26730 0.50 -1.0 1,352,886 + RR42_RS26730 0.63 -1.0 1,352,917 - RR42_RS26730 0.71 -1.0 1,353,125 + RR42_RS26735 0.11 -0.5 1,353,413 + RR42_RS26735 0.62 -0.1 1,353,413 + RR42_RS26735 0.62 -0.6 1,353,554 + RR42_RS26735 0.86 -0.0 1,353,555 - RR42_RS26735 0.87 +0.5 1,353,602 + +0.8 1,353,622 - -1.0 1,353,639 + -1.2 1,353,640 - +1.1 1,353,642 - -1.2 1,353,661 - +1.0 1,353,726 + +1.4 1,353,737 + -0.1
Or see this region's nucleotide sequence