Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25885

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25880 and RR42_RS25885 are separated by 477 nucleotidesRR42_RS25885 and RR42_RS25890 are separated by 247 nucleotides RR42_RS25880: RR42_RS25880 - hypothetical protein, at 1,146,755 to 1,147,579 _RS25880 RR42_RS25885: RR42_RS25885 - diguanylate cyclase, at 1,148,057 to 1,149,199 _RS25885 RR42_RS25890: RR42_RS25890 - Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data), at 1,149,447 to 1,150,538 _RS25890 Position (kb) 1148 1149 1150Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1147.266 kb on - strand, within RR42_RS25880at 1147.292 kb on + strand, within RR42_RS25880at 1147.293 kb on - strand, within RR42_RS25880at 1147.313 kb on + strand, within RR42_RS25880at 1147.393 kb on + strand, within RR42_RS25880at 1147.393 kb on + strand, within RR42_RS25880at 1147.393 kb on + strand, within RR42_RS25880at 1147.394 kb on - strand, within RR42_RS25880at 1147.394 kb on - strand, within RR42_RS25880at 1147.428 kb on + strand, within RR42_RS25880at 1147.429 kb on - strand, within RR42_RS25880at 1147.429 kb on - strand, within RR42_RS25880at 1147.508 kb on + strandat 1147.509 kb on - strandat 1147.509 kb on - strandat 1147.545 kb on + strandat 1147.545 kb on + strandat 1147.546 kb on - strandat 1147.546 kb on - strandat 1147.567 kb on + strandat 1147.568 kb on - strandat 1147.597 kb on + strandat 1147.606 kb on - strandat 1147.610 kb on + strandat 1147.610 kb on + strandat 1147.610 kb on + strandat 1147.611 kb on - strandat 1147.620 kb on + strandat 1147.638 kb on + strandat 1147.638 kb on + strandat 1147.639 kb on - strandat 1147.655 kb on + strandat 1147.655 kb on + strandat 1147.656 kb on - strandat 1147.656 kb on - strandat 1147.706 kb on + strandat 1147.706 kb on + strandat 1147.707 kb on - strandat 1147.733 kb on + strandat 1147.734 kb on - strandat 1147.843 kb on - strandat 1147.843 kb on - strandat 1147.888 kb on + strandat 1147.889 kb on - strandat 1147.967 kb on + strandat 1147.967 kb on + strandat 1147.967 kb on + strandat 1148.032 kb on + strandat 1148.033 kb on - strandat 1148.039 kb on + strandat 1148.039 kb on + strandat 1148.040 kb on - strandat 1148.040 kb on - strandat 1148.040 kb on - strandat 1148.158 kb on + strandat 1148.159 kb on - strandat 1148.173 kb on - strand, within RR42_RS25885at 1148.219 kb on + strand, within RR42_RS25885at 1148.219 kb on + strand, within RR42_RS25885at 1148.220 kb on - strand, within RR42_RS25885at 1148.300 kb on + strand, within RR42_RS25885at 1148.301 kb on - strand, within RR42_RS25885at 1148.445 kb on + strand, within RR42_RS25885at 1148.445 kb on + strand, within RR42_RS25885at 1148.445 kb on + strand, within RR42_RS25885at 1148.446 kb on - strand, within RR42_RS25885at 1148.446 kb on - strand, within RR42_RS25885at 1148.454 kb on + strand, within RR42_RS25885at 1148.590 kb on + strand, within RR42_RS25885at 1148.591 kb on - strand, within RR42_RS25885at 1148.627 kb on + strand, within RR42_RS25885at 1148.628 kb on - strand, within RR42_RS25885at 1148.639 kb on + strand, within RR42_RS25885at 1148.776 kb on + strand, within RR42_RS25885at 1148.777 kb on - strand, within RR42_RS25885at 1148.777 kb on - strand, within RR42_RS25885at 1149.153 kb on + strandat 1149.154 kb on - strandat 1149.154 kb on - strandat 1149.197 kb on + strandat 1149.363 kb on + strandat 1149.363 kb on + strandat 1149.363 kb on + strandat 1149.558 kb on - strand, within RR42_RS25890at 1149.558 kb on - strand, within RR42_RS25890at 1149.609 kb on - strand, within RR42_RS25890at 1149.650 kb on - strand, within RR42_RS25890at 1149.657 kb on + strand, within RR42_RS25890at 1149.658 kb on - strand, within RR42_RS25890at 1149.658 kb on - strand, within RR42_RS25890at 1149.691 kb on - strand, within RR42_RS25890at 1149.867 kb on + strand, within RR42_RS25890at 1149.867 kb on + strand, within RR42_RS25890at 1149.867 kb on + strand, within RR42_RS25890at 1150.011 kb on + strand, within RR42_RS25890at 1150.011 kb on + strand, within RR42_RS25890at 1150.011 kb on + strand, within RR42_RS25890at 1150.012 kb on - strand, within RR42_RS25890at 1150.062 kb on + strand, within RR42_RS25890at 1150.063 kb on - strand, within RR42_RS25890

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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1,147,266 - RR42_RS25880 0.62 +1.6
1,147,292 + RR42_RS25880 0.65 +0.6
1,147,293 - RR42_RS25880 0.65 +0.9
1,147,313 + RR42_RS25880 0.68 +0.6
1,147,393 + RR42_RS25880 0.77 -0.5
1,147,393 + RR42_RS25880 0.77 +1.5
1,147,393 + RR42_RS25880 0.77 -0.3
1,147,394 - RR42_RS25880 0.77 +0.0
1,147,394 - RR42_RS25880 0.77 -1.9
1,147,428 + RR42_RS25880 0.82 +0.6
1,147,429 - RR42_RS25880 0.82 +0.2
1,147,429 - RR42_RS25880 0.82 +1.5
1,147,508 + +0.6
1,147,509 - -0.4
1,147,509 - +1.7
1,147,545 + -0.5
1,147,545 + +0.1
1,147,546 - -1.4
1,147,546 - +0.5
1,147,567 + -0.5
1,147,568 - -1.1
1,147,597 + +1.1
1,147,606 - +3.2
1,147,610 + +1.3
1,147,610 + +1.2
1,147,610 + +1.1
1,147,611 - -0.3
1,147,620 + +0.8
1,147,638 + -0.0
1,147,638 + -0.6
1,147,639 - -0.5
1,147,655 + -1.9
1,147,655 + -0.3
1,147,656 - -0.6
1,147,656 - +0.2
1,147,706 + -0.3
1,147,706 + +0.2
1,147,707 - -0.7
1,147,733 + +0.1
1,147,734 - +0.3
1,147,843 - -1.5
1,147,843 - -0.8
1,147,888 + -0.7
1,147,889 - -1.5
1,147,967 + +0.1
1,147,967 + +0.2
1,147,967 + -1.1
1,148,032 + -0.5
1,148,033 - -0.7
1,148,039 + -0.4
1,148,039 + -0.7
1,148,040 - +1.6
1,148,040 - -0.1
1,148,040 - +0.2
1,148,158 + +1.2
1,148,159 - -0.7
1,148,173 - RR42_RS25885 0.10 -0.1
1,148,219 + RR42_RS25885 0.14 -0.3
1,148,219 + RR42_RS25885 0.14 -2.7
1,148,220 - RR42_RS25885 0.14 -2.4
1,148,300 + RR42_RS25885 0.21 -0.6
1,148,301 - RR42_RS25885 0.21 -0.1
1,148,445 + RR42_RS25885 0.34 -0.9
1,148,445 + RR42_RS25885 0.34 -0.3
1,148,445 + RR42_RS25885 0.34 -0.9
1,148,446 - RR42_RS25885 0.34 -0.5
1,148,446 - RR42_RS25885 0.34 +0.8
1,148,454 + RR42_RS25885 0.35 +0.2
1,148,590 + RR42_RS25885 0.47 -0.2
1,148,591 - RR42_RS25885 0.47 -0.2
1,148,627 + RR42_RS25885 0.50 +1.5
1,148,628 - RR42_RS25885 0.50 +0.2
1,148,639 + RR42_RS25885 0.51 +1.2
1,148,776 + RR42_RS25885 0.63 -0.3
1,148,777 - RR42_RS25885 0.63 +0.6
1,148,777 - RR42_RS25885 0.63 -0.8
1,149,153 + -1.0
1,149,154 - +0.4
1,149,154 - -1.0
1,149,197 + +1.1
1,149,363 + -0.8
1,149,363 + -0.1
1,149,363 + -0.2
1,149,558 - RR42_RS25890 0.10 +0.3
1,149,558 - RR42_RS25890 0.10 +1.1
1,149,609 - RR42_RS25890 0.15 -0.4
1,149,650 - RR42_RS25890 0.19 -0.0
1,149,657 + RR42_RS25890 0.19 -0.3
1,149,658 - RR42_RS25890 0.19 +0.3
1,149,658 - RR42_RS25890 0.19 +0.7
1,149,691 - RR42_RS25890 0.22 +0.6
1,149,867 + RR42_RS25890 0.38 -1.0
1,149,867 + RR42_RS25890 0.38 +0.1
1,149,867 + RR42_RS25890 0.38 -0.4
1,150,011 + RR42_RS25890 0.52 +0.2
1,150,011 + RR42_RS25890 0.52 -0.1
1,150,011 + RR42_RS25890 0.52 +0.0
1,150,012 - RR42_RS25890 0.52 +0.6
1,150,062 + RR42_RS25890 0.56 +0.6
1,150,063 - RR42_RS25890 0.56 -0.9

Or see this region's nucleotide sequence