Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25805 and RR42_RS25810 are separated by 623 nucleotides RR42_RS25810 and RR42_RS25815 are separated by 1 nucleotides RR42_RS25815 and RR42_RS25820 are separated by 47 nucleotides RR42_RS25820 and RR42_RS25825 are separated by 55 nucleotides
RR42_RS25805: RR42_RS25805 - hypothetical protein, at 1,129,045 to 1,130,439
_RS25805
RR42_RS25810: RR42_RS25810 - DNA-binding protein, at 1,131,063 to 1,131,314
_RS25810
RR42_RS25815: RR42_RS25815 - hypothetical protein, at 1,131,316 to 1,132,113
_RS25815
RR42_RS25820: RR42_RS25820 - DNA polymerase III subunit epsilon, at 1,132,161 to 1,132,781
_RS25820
RR42_RS25825: RR42_RS25825 - histidine kinase, at 1,132,837 to 1,133,787
_RS25825
Position (kb) 1131
1132
1133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1130.457 kb on + strand at 1130.460 kb on + strand at 1130.460 kb on + strand at 1130.460 kb on + strand at 1130.525 kb on - strand at 1130.525 kb on - strand at 1130.532 kb on + strand at 1130.532 kb on + strand at 1130.532 kb on + strand at 1130.532 kb on + strand at 1130.532 kb on + strand at 1130.533 kb on - strand at 1130.590 kb on + strand at 1130.591 kb on - strand at 1130.591 kb on - strand at 1130.591 kb on - strand at 1130.591 kb on - strand at 1130.716 kb on + strand at 1130.716 kb on + strand at 1130.736 kb on + strand at 1130.737 kb on - strand at 1130.824 kb on + strand at 1130.824 kb on + strand at 1130.862 kb on + strand at 1130.868 kb on + strand at 1131.064 kb on + strand at 1131.065 kb on - strand at 1131.065 kb on - strand at 1131.173 kb on + strand, within RR42_RS25810 at 1131.174 kb on - strand, within RR42_RS25810 at 1131.175 kb on + strand, within RR42_RS25810 at 1131.175 kb on + strand, within RR42_RS25810 at 1131.175 kb on + strand, within RR42_RS25810 at 1131.175 kb on + strand, within RR42_RS25810 at 1131.176 kb on - strand, within RR42_RS25810 at 1131.176 kb on - strand, within RR42_RS25810 at 1131.176 kb on - strand, within RR42_RS25810 at 1131.306 kb on + strand at 1131.306 kb on + strand at 1131.307 kb on - strand at 1131.377 kb on + strand at 1131.377 kb on + strand at 1131.614 kb on + strand, within RR42_RS25815 at 1131.614 kb on + strand, within RR42_RS25815 at 1131.775 kb on + strand, within RR42_RS25815 at 1131.775 kb on + strand, within RR42_RS25815 at 1131.775 kb on + strand, within RR42_RS25815 at 1131.839 kb on + strand, within RR42_RS25815 at 1131.839 kb on + strand, within RR42_RS25815 at 1132.246 kb on + strand, within RR42_RS25820 at 1132.247 kb on - strand, within RR42_RS25820 at 1132.267 kb on + strand, within RR42_RS25820 at 1132.267 kb on + strand, within RR42_RS25820 at 1132.267 kb on + strand, within RR42_RS25820 at 1132.370 kb on + strand, within RR42_RS25820 at 1132.370 kb on + strand, within RR42_RS25820 at 1132.371 kb on - strand, within RR42_RS25820 at 1132.371 kb on - strand, within RR42_RS25820
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 1,130,457 + -0.9 1,130,460 + +1.5 1,130,460 + -0.5 1,130,460 + +1.0 1,130,525 - +1.0 1,130,525 - -0.1 1,130,532 + +0.1 1,130,532 + +0.1 1,130,532 + -0.2 1,130,532 + +0.2 1,130,532 + +1.2 1,130,533 - +1.2 1,130,590 + -0.2 1,130,591 - +0.9 1,130,591 - -0.9 1,130,591 - -0.0 1,130,591 - -1.9 1,130,716 + -1.5 1,130,716 + +1.4 1,130,736 + -0.9 1,130,737 - +1.8 1,130,824 + -1.0 1,130,824 + +0.4 1,130,862 + -1.1 1,130,868 + -1.3 1,131,064 + -0.5 1,131,065 - -0.6 1,131,065 - -1.1 1,131,173 + RR42_RS25810 0.44 -0.7 1,131,174 - RR42_RS25810 0.44 +0.5 1,131,175 + RR42_RS25810 0.44 -0.4 1,131,175 + RR42_RS25810 0.44 -0.5 1,131,175 + RR42_RS25810 0.44 +0.1 1,131,175 + RR42_RS25810 0.44 +1.6 1,131,176 - RR42_RS25810 0.45 -2.4 1,131,176 - RR42_RS25810 0.45 -1.2 1,131,176 - RR42_RS25810 0.45 +1.4 1,131,306 + -2.6 1,131,306 + -0.1 1,131,307 - -0.9 1,131,377 + -0.6 1,131,377 + -0.2 1,131,614 + RR42_RS25815 0.37 -0.6 1,131,614 + RR42_RS25815 0.37 -0.9 1,131,775 + RR42_RS25815 0.58 -0.1 1,131,775 + RR42_RS25815 0.58 -1.3 1,131,775 + RR42_RS25815 0.58 +1.6 1,131,839 + RR42_RS25815 0.66 -0.8 1,131,839 + RR42_RS25815 0.66 -1.2 1,132,246 + RR42_RS25820 0.14 +0.1 1,132,247 - RR42_RS25820 0.14 +0.2 1,132,267 + RR42_RS25820 0.17 -0.1 1,132,267 + RR42_RS25820 0.17 -0.9 1,132,267 + RR42_RS25820 0.17 -0.0 1,132,370 + RR42_RS25820 0.34 +1.5 1,132,370 + RR42_RS25820 0.34 -0.2 1,132,371 - RR42_RS25820 0.34 +1.2 1,132,371 - RR42_RS25820 0.34 -0.6
Or see this region's nucleotide sequence