Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25190 and RR42_RS25195 are separated by 66 nucleotides RR42_RS25195 and RR42_RS25200 are separated by 558 nucleotides
RR42_RS25190: RR42_RS25190 - acyl-CoA dehydrogenase, at 991,425 to 993,194
_RS25190
RR42_RS25195: RR42_RS25195 - AMP-dependent synthetase, at 993,261 to 994,934
_RS25195
RR42_RS25200: RR42_RS25200 - TetR family transcriptional regulator, at 995,493 to 996,071
_RS25200
Position (kb) 993
994
995 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 992.269 kb on + strand, within RR42_RS25190 at 992.375 kb on - strand, within RR42_RS25190 at 992.628 kb on + strand, within RR42_RS25190 at 992.629 kb on - strand, within RR42_RS25190 at 992.629 kb on - strand, within RR42_RS25190 at 992.752 kb on + strand, within RR42_RS25190 at 992.752 kb on + strand, within RR42_RS25190 at 992.753 kb on - strand, within RR42_RS25190 at 992.797 kb on + strand, within RR42_RS25190 at 992.797 kb on + strand, within RR42_RS25190 at 992.798 kb on - strand, within RR42_RS25190 at 992.841 kb on - strand, within RR42_RS25190 at 992.854 kb on - strand, within RR42_RS25190 at 992.953 kb on + strand, within RR42_RS25190 at 992.953 kb on + strand, within RR42_RS25190 at 993.078 kb on + strand at 993.079 kb on - strand at 993.184 kb on + strand at 993.184 kb on + strand at 993.185 kb on - strand at 993.185 kb on - strand at 993.185 kb on - strand at 993.187 kb on + strand at 993.188 kb on - strand at 993.188 kb on - strand at 993.188 kb on - strand at 993.195 kb on - strand at 993.195 kb on - strand at 993.263 kb on - strand at 993.353 kb on + strand at 993.353 kb on + strand at 993.372 kb on - strand at 993.372 kb on - strand at 993.869 kb on - strand, within RR42_RS25195 at 993.869 kb on - strand, within RR42_RS25195 at 993.973 kb on - strand, within RR42_RS25195 at 994.151 kb on + strand, within RR42_RS25195 at 994.151 kb on + strand, within RR42_RS25195 at 994.152 kb on - strand, within RR42_RS25195 at 994.156 kb on + strand, within RR42_RS25195 at 994.156 kb on + strand, within RR42_RS25195 at 994.156 kb on + strand, within RR42_RS25195 at 994.297 kb on + strand, within RR42_RS25195 at 994.297 kb on + strand, within RR42_RS25195 at 994.297 kb on + strand, within RR42_RS25195 at 994.464 kb on - strand, within RR42_RS25195 at 994.542 kb on + strand, within RR42_RS25195 at 994.542 kb on + strand, within RR42_RS25195 at 994.542 kb on + strand, within RR42_RS25195 at 994.560 kb on - strand, within RR42_RS25195 at 994.610 kb on + strand, within RR42_RS25195 at 994.611 kb on - strand, within RR42_RS25195 at 994.653 kb on + strand, within RR42_RS25195 at 994.704 kb on + strand, within RR42_RS25195 at 994.704 kb on + strand, within RR42_RS25195 at 994.705 kb on - strand, within RR42_RS25195 at 994.780 kb on + strand at 994.781 kb on - strand at 994.784 kb on + strand at 994.785 kb on - strand at 994.914 kb on - strand at 994.934 kb on + strand at 994.934 kb on + strand at 994.954 kb on + strand at 994.955 kb on - strand at 994.969 kb on - strand at 995.087 kb on - strand at 995.187 kb on + strand at 995.188 kb on - strand at 995.188 kb on - strand at 995.215 kb on - strand at 995.382 kb on - strand at 995.382 kb on - strand at 995.415 kb on + strand at 995.415 kb on + strand at 995.453 kb on + strand at 995.453 kb on + strand at 995.454 kb on - strand at 995.546 kb on + strand at 995.546 kb on + strand at 995.634 kb on + strand, within RR42_RS25200 at 995.634 kb on + strand, within RR42_RS25200 at 995.634 kb on + strand, within RR42_RS25200 at 995.635 kb on - strand, within RR42_RS25200 at 995.635 kb on - strand, within RR42_RS25200 at 995.636 kb on + strand, within RR42_RS25200 at 995.763 kb on + strand, within RR42_RS25200 at 995.764 kb on - strand, within RR42_RS25200
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 992,269 + RR42_RS25190 0.48 -0.1 992,375 - RR42_RS25190 0.54 +0.1 992,628 + RR42_RS25190 0.68 +1.0 992,629 - RR42_RS25190 0.68 +2.3 992,629 - RR42_RS25190 0.68 -0.7 992,752 + RR42_RS25190 0.75 -0.8 992,752 + RR42_RS25190 0.75 +1.7 992,753 - RR42_RS25190 0.75 -1.0 992,797 + RR42_RS25190 0.78 -0.5 992,797 + RR42_RS25190 0.78 -1.6 992,798 - RR42_RS25190 0.78 -1.2 992,841 - RR42_RS25190 0.80 -0.8 992,854 - RR42_RS25190 0.81 +1.3 992,953 + RR42_RS25190 0.86 -0.8 992,953 + RR42_RS25190 0.86 +1.3 993,078 + +0.1 993,079 - +0.8 993,184 + -0.8 993,184 + -0.5 993,185 - -0.9 993,185 - -0.6 993,185 - -0.2 993,187 + -0.9 993,188 - +0.2 993,188 - +1.3 993,188 - +1.2 993,195 - +0.5 993,195 - +0.1 993,263 - -0.6 993,353 + -0.3 993,353 + -0.9 993,372 - -0.3 993,372 - -0.1 993,869 - RR42_RS25195 0.36 +1.3 993,869 - RR42_RS25195 0.36 +0.9 993,973 - RR42_RS25195 0.43 -0.2 994,151 + RR42_RS25195 0.53 +0.5 994,151 + RR42_RS25195 0.53 -1.0 994,152 - RR42_RS25195 0.53 +0.8 994,156 + RR42_RS25195 0.53 +0.1 994,156 + RR42_RS25195 0.53 +1.6 994,156 + RR42_RS25195 0.53 -0.9 994,297 + RR42_RS25195 0.62 -0.6 994,297 + RR42_RS25195 0.62 +0.1 994,297 + RR42_RS25195 0.62 +0.9 994,464 - RR42_RS25195 0.72 -0.4 994,542 + RR42_RS25195 0.77 -0.0 994,542 + RR42_RS25195 0.77 +1.6 994,542 + RR42_RS25195 0.77 +0.4 994,560 - RR42_RS25195 0.78 -0.5 994,610 + RR42_RS25195 0.81 +0.1 994,611 - RR42_RS25195 0.81 +1.1 994,653 + RR42_RS25195 0.83 -0.1 994,704 + RR42_RS25195 0.86 -1.0 994,704 + RR42_RS25195 0.86 +0.6 994,705 - RR42_RS25195 0.86 -1.3 994,780 + +0.5 994,781 - -0.1 994,784 + +0.8 994,785 - -0.1 994,914 - -1.5 994,934 + -0.9 994,934 + -1.2 994,954 + +0.7 994,955 - -0.2 994,969 - -1.0 995,087 - -0.6 995,187 + +0.7 995,188 - -0.5 995,188 - +0.1 995,215 - -0.1 995,382 - -0.5 995,382 - +0.1 995,415 + +0.9 995,415 + -0.2 995,453 + -0.2 995,453 + +0.5 995,454 - -0.4 995,546 + +0.8 995,546 + +0.7 995,634 + RR42_RS25200 0.24 -0.2 995,634 + RR42_RS25200 0.24 -0.8 995,634 + RR42_RS25200 0.24 -2.2 995,635 - RR42_RS25200 0.25 +2.3 995,635 - RR42_RS25200 0.25 -0.5 995,636 + RR42_RS25200 0.25 -0.3 995,763 + RR42_RS25200 0.47 +3.3 995,764 - RR42_RS25200 0.47 -0.9
Or see this region's nucleotide sequence