Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24845 and RR42_RS24850 overlap by 1 nucleotides RR42_RS24850 and RR42_RS24855 are separated by 32 nucleotides
RR42_RS24845: RR42_RS24845 - iditol 2-dehydrogenase, at 911,968 to 913,023
_RS24845
RR42_RS24850: RR42_RS24850 - alpha/beta hydrolase, at 913,023 to 913,943
_RS24850
RR42_RS24855: RR42_RS24855 - MFS transporter, at 913,976 to 915,304
_RS24855
Position (kb) 913
914
915
916 Strain fitness (log2 ratio) -2
-1
0
1
2 at 913.091 kb on - strand at 913.100 kb on - strand at 913.355 kb on - strand, within RR42_RS24850 at 913.525 kb on + strand, within RR42_RS24850 at 913.526 kb on - strand, within RR42_RS24850 at 913.526 kb on - strand, within RR42_RS24850 at 913.692 kb on + strand, within RR42_RS24850 at 913.712 kb on - strand, within RR42_RS24850 at 913.858 kb on + strand at 913.993 kb on - strand at 914.085 kb on + strand at 914.231 kb on + strand, within RR42_RS24855 at 914.232 kb on + strand, within RR42_RS24855 at 914.233 kb on - strand, within RR42_RS24855 at 914.459 kb on + strand, within RR42_RS24855 at 914.646 kb on - strand, within RR42_RS24855 at 914.646 kb on - strand, within RR42_RS24855 at 914.749 kb on - strand, within RR42_RS24855 at 914.914 kb on - strand, within RR42_RS24855 at 915.211 kb on - strand at 915.269 kb on + strand at 915.270 kb on - strand at 915.270 kb on - strand at 915.390 kb on + strand at 915.390 kb on + strand at 915.391 kb on - strand at 915.522 kb on - strand at 915.642 kb on + strand at 915.643 kb on + strand at 915.644 kb on - strand at 915.648 kb on - strand at 915.736 kb on - strand at 915.736 kb on - strand at 915.776 kb on - strand at 916.143 kb on - strand at 916.212 kb on + strand at 916.212 kb on + strand at 916.212 kb on + strand at 916.212 kb on + strand at 916.213 kb on - strand at 916.213 kb on - strand at 916.213 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 913,091 - +1.9 913,100 - +1.6 913,355 - RR42_RS24850 0.36 +2.6 913,525 + RR42_RS24850 0.55 +1.6 913,526 - RR42_RS24850 0.55 -0.1 913,526 - RR42_RS24850 0.55 -0.5 913,692 + RR42_RS24850 0.73 +0.7 913,712 - RR42_RS24850 0.75 -0.0 913,858 + +0.7 913,993 - +0.7 914,085 + +0.3 914,231 + RR42_RS24855 0.19 -0.7 914,232 + RR42_RS24855 0.19 +0.4 914,233 - RR42_RS24855 0.19 +0.1 914,459 + RR42_RS24855 0.36 -0.4 914,646 - RR42_RS24855 0.50 +1.2 914,646 - RR42_RS24855 0.50 +1.0 914,749 - RR42_RS24855 0.58 +0.1 914,914 - RR42_RS24855 0.71 +1.0 915,211 - +0.0 915,269 + -1.7 915,270 - -1.9 915,270 - +2.3 915,390 + -1.1 915,390 + +0.7 915,391 - +0.6 915,522 - +0.7 915,642 + -0.9 915,643 + +0.2 915,644 - +1.3 915,648 - -1.1 915,736 - +2.6 915,736 - -0.0 915,776 - -1.7 916,143 - +0.9 916,212 + +2.0 916,212 + +0.4 916,212 + +0.0 916,212 + +0.2 916,213 - +0.5 916,213 - +0.0 916,213 - -0.5
Or see this region's nucleotide sequence