Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24825 and RR42_RS24830 are separated by 35 nucleotides RR42_RS24830 and RR42_RS24835 are separated by 34 nucleotides RR42_RS24835 and RR42_RS24840 are separated by 70 nucleotides
RR42_RS24825: RR42_RS24825 - carnitine dehydratase, at 907,023 to 908,177
_RS24825
RR42_RS24830: RR42_RS24830 - 3-oxoacyl-ACP reductase, at 908,213 to 909,013
_RS24830
RR42_RS24835: RR42_RS24835 - carnitine dehydratase, at 909,048 to 910,385
_RS24835
RR42_RS24840: RR42_RS24840 - aldehyde dehydrogenase, at 910,456 to 911,916
_RS24840
Position (kb) 909
910
911 Strain fitness (log2 ratio) -1
0
1 at 908.262 kb on + strand at 908.263 kb on - strand at 908.306 kb on - strand, within RR42_RS24830 at 908.355 kb on + strand, within RR42_RS24830 at 908.355 kb on + strand, within RR42_RS24830 at 908.356 kb on - strand, within RR42_RS24830 at 908.356 kb on - strand, within RR42_RS24830 at 909.125 kb on + strand at 909.126 kb on - strand at 909.126 kb on - strand at 909.371 kb on + strand, within RR42_RS24835 at 909.372 kb on - strand, within RR42_RS24835 at 909.589 kb on + strand, within RR42_RS24835 at 909.590 kb on - strand, within RR42_RS24835 at 909.590 kb on - strand, within RR42_RS24835 at 909.679 kb on + strand, within RR42_RS24835 at 909.680 kb on - strand, within RR42_RS24835 at 909.748 kb on + strand, within RR42_RS24835 at 909.749 kb on - strand, within RR42_RS24835 at 909.749 kb on - strand, within RR42_RS24835 at 909.782 kb on - strand, within RR42_RS24835 at 909.836 kb on - strand, within RR42_RS24835 at 909.884 kb on - strand, within RR42_RS24835 at 909.884 kb on - strand, within RR42_RS24835 at 909.919 kb on + strand, within RR42_RS24835 at 909.920 kb on - strand, within RR42_RS24835 at 911.105 kb on + strand, within RR42_RS24840
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 908,262 + -0.2 908,263 - +0.9 908,306 - RR42_RS24830 0.12 -1.2 908,355 + RR42_RS24830 0.18 +1.6 908,355 + RR42_RS24830 0.18 +0.6 908,356 - RR42_RS24830 0.18 +0.7 908,356 - RR42_RS24830 0.18 -0.1 909,125 + +0.2 909,126 - +0.4 909,126 - -0.6 909,371 + RR42_RS24835 0.24 -0.6 909,372 - RR42_RS24835 0.24 -0.2 909,589 + RR42_RS24835 0.40 +0.7 909,590 - RR42_RS24835 0.41 -0.9 909,590 - RR42_RS24835 0.41 -0.7 909,679 + RR42_RS24835 0.47 +0.9 909,680 - RR42_RS24835 0.47 +0.1 909,748 + RR42_RS24835 0.52 -1.4 909,749 - RR42_RS24835 0.52 -0.5 909,749 - RR42_RS24835 0.52 +0.4 909,782 - RR42_RS24835 0.55 -1.4 909,836 - RR42_RS24835 0.59 +0.0 909,884 - RR42_RS24835 0.62 -0.2 909,884 - RR42_RS24835 0.62 +0.7 909,919 + RR42_RS24835 0.65 +0.7 909,920 - RR42_RS24835 0.65 +0.3 911,105 + RR42_RS24840 0.44 -0.1
Or see this region's nucleotide sequence