Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24795 and RR42_RS24800 are separated by 28 nucleotides RR42_RS24800 and RR42_RS24805 are separated by 10 nucleotides RR42_RS24805 and RR42_RS24810 are separated by 13 nucleotides RR42_RS24810 and RR42_RS24815 are separated by 59 nucleotides
RR42_RS24795: RR42_RS24795 - butyryl-CoA dehydrogenase, at 901,264 to 902,412
_RS24795
RR42_RS24800: RR42_RS24800 - dehydratase, at 902,441 to 902,956
_RS24800
RR42_RS24805: RR42_RS24805 - thiolase, at 902,967 to 904,181
_RS24805
RR42_RS24810: RR42_RS24810 - hypothetical protein, at 904,195 to 904,602
_RS24810
RR42_RS24815: RR42_RS24815 - hypothetical protein, at 904,662 to 905,681
_RS24815
Position (kb) 902
903
904
905 Strain fitness (log2 ratio) -1
0
1
2 at 902.018 kb on - strand, within RR42_RS24795 at 902.323 kb on + strand at 902.324 kb on - strand at 902.434 kb on + strand at 902.435 kb on - strand at 902.562 kb on - strand, within RR42_RS24800 at 902.562 kb on - strand, within RR42_RS24800 at 902.609 kb on + strand, within RR42_RS24800 at 902.660 kb on + strand, within RR42_RS24800 at 902.661 kb on - strand, within RR42_RS24800 at 902.711 kb on + strand, within RR42_RS24800 at 902.712 kb on - strand, within RR42_RS24800 at 902.712 kb on - strand, within RR42_RS24800 at 902.747 kb on + strand, within RR42_RS24800 at 902.747 kb on + strand, within RR42_RS24800 at 902.773 kb on - strand, within RR42_RS24800 at 903.013 kb on - strand at 903.013 kb on - strand at 903.405 kb on + strand, within RR42_RS24805 at 903.439 kb on - strand, within RR42_RS24805 at 903.632 kb on - strand, within RR42_RS24805 at 903.679 kb on - strand, within RR42_RS24805 at 903.714 kb on + strand, within RR42_RS24805 at 903.715 kb on - strand, within RR42_RS24805 at 903.715 kb on - strand, within RR42_RS24805 at 903.943 kb on - strand, within RR42_RS24805 at 904.285 kb on + strand, within RR42_RS24810 at 904.286 kb on - strand, within RR42_RS24810 at 904.454 kb on - strand, within RR42_RS24810 at 904.487 kb on - strand, within RR42_RS24810 at 904.638 kb on + strand at 904.648 kb on + strand at 904.649 kb on - strand at 904.703 kb on - strand at 905.067 kb on + strand, within RR42_RS24815 at 905.067 kb on + strand, within RR42_RS24815 at 905.067 kb on + strand, within RR42_RS24815
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 902,018 - RR42_RS24795 0.66 +0.4 902,323 + -0.4 902,324 - +0.3 902,434 + +0.0 902,435 - +0.3 902,562 - RR42_RS24800 0.23 +1.3 902,562 - RR42_RS24800 0.23 -0.5 902,609 + RR42_RS24800 0.33 -0.3 902,660 + RR42_RS24800 0.42 +0.0 902,661 - RR42_RS24800 0.43 +1.0 902,711 + RR42_RS24800 0.52 -0.1 902,712 - RR42_RS24800 0.53 +2.3 902,712 - RR42_RS24800 0.53 -1.1 902,747 + RR42_RS24800 0.59 -0.7 902,747 + RR42_RS24800 0.59 +0.7 902,773 - RR42_RS24800 0.64 +0.9 903,013 - -0.4 903,013 - +0.2 903,405 + RR42_RS24805 0.36 +0.6 903,439 - RR42_RS24805 0.39 +0.5 903,632 - RR42_RS24805 0.55 +1.6 903,679 - RR42_RS24805 0.59 +1.3 903,714 + RR42_RS24805 0.61 -0.5 903,715 - RR42_RS24805 0.62 +0.9 903,715 - RR42_RS24805 0.62 -0.2 903,943 - RR42_RS24805 0.80 -0.1 904,285 + RR42_RS24810 0.22 -1.6 904,286 - RR42_RS24810 0.22 -0.1 904,454 - RR42_RS24810 0.63 -0.3 904,487 - RR42_RS24810 0.72 -0.8 904,638 + +0.7 904,648 + -0.2 904,649 - -0.3 904,703 - +0.2 905,067 + RR42_RS24815 0.40 -0.7 905,067 + RR42_RS24815 0.40 -0.8 905,067 + RR42_RS24815 0.40 -1.1
Or see this region's nucleotide sequence