Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24675 and RR42_RS24680 are separated by 42 nucleotides RR42_RS24680 and RR42_RS24685 are separated by 39 nucleotides RR42_RS24685 and RR42_RS24690 are separated by 41 nucleotides RR42_RS24690 and RR42_RS24695 are separated by 95 nucleotides
RR42_RS24675: RR42_RS24675 - hypothetical protein, at 873,941 to 875,110
_RS24675
RR42_RS24680: RR42_RS24680 - hypothetical protein, at 875,153 to 875,704
_RS24680
RR42_RS24685: RR42_RS24685 - hypothetical protein, at 875,744 to 876,016
_RS24685
RR42_RS24690: RR42_RS24690 - hypothetical protein, at 876,058 to 876,303
_RS24690
RR42_RS24695: RR42_RS24695 - membrane protein, at 876,399 to 877,115
_RS24695
Position (kb) 875
876
877 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 875.019 kb on - strand at 875.117 kb on + strand at 875.117 kb on + strand at 875.117 kb on + strand at 875.118 kb on - strand at 875.128 kb on + strand at 875.218 kb on + strand, within RR42_RS24680 at 875.219 kb on - strand, within RR42_RS24680 at 875.636 kb on - strand, within RR42_RS24680 at 875.646 kb on + strand, within RR42_RS24680 at 875.647 kb on - strand, within RR42_RS24680 at 875.647 kb on - strand, within RR42_RS24680 at 875.658 kb on + strand at 875.698 kb on + strand at 875.699 kb on - strand at 875.837 kb on - strand, within RR42_RS24685 at 875.867 kb on + strand, within RR42_RS24685 at 875.956 kb on - strand, within RR42_RS24685 at 876.135 kb on + strand, within RR42_RS24690 at 876.329 kb on + strand at 876.330 kb on - strand at 876.330 kb on - strand at 876.333 kb on - strand at 876.333 kb on - strand at 876.333 kb on - strand at 876.751 kb on + strand, within RR42_RS24695 at 876.752 kb on - strand, within RR42_RS24695 at 876.752 kb on - strand, within RR42_RS24695 at 876.752 kb on - strand, within RR42_RS24695 at 876.752 kb on - strand, within RR42_RS24695 at 876.816 kb on - strand, within RR42_RS24695 at 876.817 kb on + strand, within RR42_RS24695 at 876.818 kb on - strand, within RR42_RS24695 at 876.887 kb on - strand, within RR42_RS24695 at 876.914 kb on - strand, within RR42_RS24695 at 876.914 kb on - strand, within RR42_RS24695
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 875,019 - +0.8 875,117 + -0.2 875,117 + -2.2 875,117 + +0.5 875,118 - +1.8 875,128 + +0.0 875,218 + RR42_RS24680 0.12 -0.2 875,219 - RR42_RS24680 0.12 -0.7 875,636 - RR42_RS24680 0.88 -0.0 875,646 + RR42_RS24680 0.89 +1.6 875,647 - RR42_RS24680 0.89 -0.2 875,647 - RR42_RS24680 0.89 -0.4 875,658 + -1.6 875,698 + +0.8 875,699 - -0.3 875,837 - RR42_RS24685 0.34 +0.4 875,867 + RR42_RS24685 0.45 +0.8 875,956 - RR42_RS24685 0.78 +3.8 876,135 + RR42_RS24690 0.31 -0.1 876,329 + -1.1 876,330 - -1.5 876,330 - -0.6 876,333 - +0.2 876,333 - +0.8 876,333 - -0.1 876,751 + RR42_RS24695 0.49 -0.2 876,752 - RR42_RS24695 0.49 -1.2 876,752 - RR42_RS24695 0.49 +0.2 876,752 - RR42_RS24695 0.49 -0.4 876,752 - RR42_RS24695 0.49 +1.0 876,816 - RR42_RS24695 0.58 +1.0 876,817 + RR42_RS24695 0.58 -0.2 876,818 - RR42_RS24695 0.58 +1.1 876,887 - RR42_RS24695 0.68 -0.7 876,914 - RR42_RS24695 0.72 +0.8 876,914 - RR42_RS24695 0.72 +0.6
Or see this region's nucleotide sequence