Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24620

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24615 and RR42_RS24620 are separated by 196 nucleotidesRR42_RS24620 and RR42_RS24625 are separated by 38 nucleotidesRR42_RS24625 and RR42_RS24630 are separated by 35 nucleotides RR42_RS24615: RR42_RS24615 - phytanoyl-CoA dioxygenase, at 859,181 to 860,059 _RS24615 RR42_RS24620: RR42_RS24620 - amine oxidase, at 860,256 to 861,752 _RS24620 RR42_RS24625: RR42_RS24625 - hypothetical protein, at 861,791 to 862,432 _RS24625 RR42_RS24630: RR42_RS24630 - amine oxidase, at 862,468 to 863,964 _RS24630 Position (kb) 860 861 862Strain fitness (log2 ratio) -2 -1 0 1 2at 859.349 kb on + strand, within RR42_RS24615at 859.350 kb on - strand, within RR42_RS24615at 859.406 kb on - strand, within RR42_RS24615at 859.433 kb on + strand, within RR42_RS24615at 859.434 kb on - strand, within RR42_RS24615at 859.817 kb on - strand, within RR42_RS24615at 859.822 kb on + strand, within RR42_RS24615at 859.823 kb on - strand, within RR42_RS24615at 859.823 kb on - strand, within RR42_RS24615at 859.887 kb on - strand, within RR42_RS24615at 859.967 kb on + strand, within RR42_RS24615at 859.967 kb on + strand, within RR42_RS24615at 859.967 kb on + strand, within RR42_RS24615at 859.967 kb on + strand, within RR42_RS24615at 859.967 kb on + strand, within RR42_RS24615at 860.216 kb on - strandat 860.651 kb on - strand, within RR42_RS24620at 860.655 kb on + strand, within RR42_RS24620at 860.655 kb on + strand, within RR42_RS24620at 860.656 kb on - strand, within RR42_RS24620at 860.909 kb on + strand, within RR42_RS24620at 860.926 kb on + strand, within RR42_RS24620at 860.940 kb on + strand, within RR42_RS24620at 860.940 kb on + strand, within RR42_RS24620at 860.941 kb on - strand, within RR42_RS24620at 861.264 kb on + strand, within RR42_RS24620at 861.265 kb on - strand, within RR42_RS24620at 861.294 kb on + strand, within RR42_RS24620at 861.294 kb on + strand, within RR42_RS24620at 861.295 kb on - strand, within RR42_RS24620at 861.477 kb on + strand, within RR42_RS24620at 861.477 kb on + strand, within RR42_RS24620at 861.477 kb on + strand, within RR42_RS24620at 861.478 kb on - strand, within RR42_RS24620at 861.478 kb on - strand, within RR42_RS24620at 861.478 kb on - strand, within RR42_RS24620at 861.478 kb on - strand, within RR42_RS24620at 861.600 kb on + strand, within RR42_RS24620at 861.648 kb on - strandat 861.672 kb on - strandat 861.691 kb on + strandat 861.691 kb on + strandat 861.849 kb on - strandat 861.864 kb on - strand, within RR42_RS24625at 861.971 kb on + strand, within RR42_RS24625at 861.972 kb on - strand, within RR42_RS24625at 862.028 kb on + strand, within RR42_RS24625at 862.029 kb on - strand, within RR42_RS24625at 862.271 kb on + strand, within RR42_RS24625at 862.369 kb on - strandat 862.476 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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859,349 + RR42_RS24615 0.19 -0.5
859,350 - RR42_RS24615 0.19 +1.3
859,406 - RR42_RS24615 0.26 -0.5
859,433 + RR42_RS24615 0.29 -0.9
859,434 - RR42_RS24615 0.29 -0.5
859,817 - RR42_RS24615 0.72 +0.9
859,822 + RR42_RS24615 0.73 -0.5
859,823 - RR42_RS24615 0.73 -0.7
859,823 - RR42_RS24615 0.73 -0.5
859,887 - RR42_RS24615 0.80 -0.1
859,967 + RR42_RS24615 0.89 +0.2
859,967 + RR42_RS24615 0.89 -1.2
859,967 + RR42_RS24615 0.89 +0.0
859,967 + RR42_RS24615 0.89 -1.0
859,967 + RR42_RS24615 0.89 -0.5
860,216 - +0.9
860,651 - RR42_RS24620 0.26 -0.7
860,655 + RR42_RS24620 0.27 -1.7
860,655 + RR42_RS24620 0.27 -1.0
860,656 - RR42_RS24620 0.27 +1.8
860,909 + RR42_RS24620 0.44 -0.5
860,926 + RR42_RS24620 0.45 -2.0
860,940 + RR42_RS24620 0.46 +1.2
860,940 + RR42_RS24620 0.46 -0.8
860,941 - RR42_RS24620 0.46 +1.5
861,264 + RR42_RS24620 0.67 +1.1
861,265 - RR42_RS24620 0.67 +0.9
861,294 + RR42_RS24620 0.69 -0.7
861,294 + RR42_RS24620 0.69 +2.0
861,295 - RR42_RS24620 0.69 +2.3
861,477 + RR42_RS24620 0.82 +0.0
861,477 + RR42_RS24620 0.82 -2.3
861,477 + RR42_RS24620 0.82 +0.0
861,478 - RR42_RS24620 0.82 -0.0
861,478 - RR42_RS24620 0.82 +1.1
861,478 - RR42_RS24620 0.82 +0.5
861,478 - RR42_RS24620 0.82 +1.5
861,600 + RR42_RS24620 0.90 +0.2
861,648 - -1.2
861,672 - +0.8
861,691 + -0.5
861,691 + +0.3
861,849 - +0.7
861,864 - RR42_RS24625 0.11 -0.7
861,971 + RR42_RS24625 0.28 -0.0
861,972 - RR42_RS24625 0.28 -0.2
862,028 + RR42_RS24625 0.37 +0.6
862,029 - RR42_RS24625 0.37 +0.1
862,271 + RR42_RS24625 0.75 +1.3
862,369 - -0.4
862,476 + +0.5

Or see this region's nucleotide sequence