Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24100 and RR42_RS24105 are separated by 384 nucleotides RR42_RS24105 and RR42_RS24110 are separated by 608 nucleotides
RR42_RS24100: RR42_RS24100 - hypothetical protein, at 731,001 to 731,516
_RS24100
RR42_RS24105: RR42_RS24105 - membrane protein, at 731,901 to 733,004
_RS24105
RR42_RS24110: RR42_RS24110 - C4-dicarboxylate ABC transporter permease, at 733,613 to 734,929
_RS24110
Position (kb) 731
732
733
734 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 730.906 kb on - strand at 730.906 kb on - strand at 731.137 kb on + strand, within RR42_RS24100 at 731.220 kb on + strand, within RR42_RS24100 at 731.232 kb on + strand, within RR42_RS24100 at 731.232 kb on + strand, within RR42_RS24100 at 731.233 kb on - strand, within RR42_RS24100 at 731.233 kb on - strand, within RR42_RS24100 at 731.330 kb on + strand, within RR42_RS24100 at 731.331 kb on - strand, within RR42_RS24100 at 731.352 kb on + strand, within RR42_RS24100 at 731.352 kb on + strand, within RR42_RS24100 at 731.352 kb on + strand, within RR42_RS24100 at 731.458 kb on + strand, within RR42_RS24100 at 731.512 kb on + strand at 731.512 kb on + strand at 731.513 kb on - strand at 731.513 kb on - strand at 731.513 kb on - strand at 731.544 kb on - strand at 731.544 kb on - strand at 731.552 kb on + strand at 731.553 kb on - strand at 731.553 kb on - strand at 731.568 kb on + strand at 731.568 kb on + strand at 731.569 kb on - strand at 731.630 kb on - strand at 731.647 kb on - strand at 731.647 kb on - strand at 731.647 kb on - strand at 731.647 kb on - strand at 731.895 kb on + strand at 731.895 kb on + strand at 731.895 kb on + strand at 731.896 kb on - strand at 731.896 kb on - strand at 731.896 kb on - strand at 731.902 kb on + strand at 731.903 kb on - strand at 731.903 kb on - strand at 732.017 kb on - strand, within RR42_RS24105 at 732.017 kb on - strand, within RR42_RS24105 at 732.058 kb on + strand, within RR42_RS24105 at 732.058 kb on + strand, within RR42_RS24105 at 732.058 kb on + strand, within RR42_RS24105 at 732.059 kb on - strand, within RR42_RS24105 at 732.059 kb on - strand, within RR42_RS24105 at 732.059 kb on - strand, within RR42_RS24105 at 732.059 kb on - strand, within RR42_RS24105 at 732.059 kb on - strand, within RR42_RS24105 at 732.059 kb on - strand, within RR42_RS24105 at 732.059 kb on - strand, within RR42_RS24105 at 732.137 kb on + strand, within RR42_RS24105 at 732.152 kb on + strand, within RR42_RS24105 at 732.152 kb on + strand, within RR42_RS24105 at 732.173 kb on + strand, within RR42_RS24105 at 732.173 kb on - strand, within RR42_RS24105 at 732.173 kb on - strand, within RR42_RS24105 at 732.175 kb on + strand, within RR42_RS24105 at 732.176 kb on - strand, within RR42_RS24105 at 732.259 kb on + strand, within RR42_RS24105 at 732.288 kb on + strand, within RR42_RS24105 at 732.343 kb on + strand, within RR42_RS24105 at 732.344 kb on - strand, within RR42_RS24105 at 732.356 kb on + strand, within RR42_RS24105 at 732.371 kb on + strand, within RR42_RS24105 at 732.371 kb on + strand, within RR42_RS24105 at 732.372 kb on - strand, within RR42_RS24105 at 732.372 kb on - strand, within RR42_RS24105 at 732.376 kb on + strand, within RR42_RS24105 at 732.377 kb on - strand, within RR42_RS24105 at 732.384 kb on + strand, within RR42_RS24105 at 732.384 kb on + strand, within RR42_RS24105 at 732.385 kb on - strand, within RR42_RS24105 at 732.388 kb on - strand, within RR42_RS24105 at 732.490 kb on + strand, within RR42_RS24105 at 732.490 kb on + strand, within RR42_RS24105 at 732.491 kb on - strand, within RR42_RS24105 at 732.491 kb on - strand, within RR42_RS24105 at 732.491 kb on - strand, within RR42_RS24105 at 732.491 kb on - strand, within RR42_RS24105 at 732.494 kb on + strand, within RR42_RS24105 at 732.529 kb on + strand, within RR42_RS24105 at 732.565 kb on + strand, within RR42_RS24105 at 732.565 kb on + strand, within RR42_RS24105 at 732.565 kb on + strand, within RR42_RS24105 at 732.565 kb on + strand, within RR42_RS24105 at 732.566 kb on - strand, within RR42_RS24105 at 732.566 kb on - strand, within RR42_RS24105 at 732.566 kb on - strand, within RR42_RS24105 at 732.566 kb on - strand, within RR42_RS24105 at 732.566 kb on - strand, within RR42_RS24105 at 732.566 kb on - strand, within RR42_RS24105 at 732.643 kb on + strand, within RR42_RS24105 at 732.643 kb on + strand, within RR42_RS24105 at 732.644 kb on - strand, within RR42_RS24105 at 732.644 kb on - strand, within RR42_RS24105 at 732.644 kb on - strand, within RR42_RS24105 at 732.680 kb on + strand, within RR42_RS24105 at 732.894 kb on + strand at 733.048 kb on + strand at 733.121 kb on + strand at 733.122 kb on - strand at 733.161 kb on + strand at 733.172 kb on + strand at 733.172 kb on + strand at 733.172 kb on + strand at 733.192 kb on + strand at 733.291 kb on - strand at 733.291 kb on - strand at 733.318 kb on + strand at 733.318 kb on + strand at 733.319 kb on - strand at 733.372 kb on + strand at 733.372 kb on + strand at 733.372 kb on + strand at 733.373 kb on - strand at 733.373 kb on - strand at 733.376 kb on + strand at 733.377 kb on - strand at 733.389 kb on - strand at 733.389 kb on - strand at 733.391 kb on + strand at 733.454 kb on - strand at 733.457 kb on - strand at 733.516 kb on - strand at 733.632 kb on - strand at 733.694 kb on - strand at 733.695 kb on + strand at 733.695 kb on + strand at 733.695 kb on + strand at 733.695 kb on + strand at 733.715 kb on + strand at 733.716 kb on - strand at 733.716 kb on - strand at 733.716 kb on - strand at 733.763 kb on + strand, within RR42_RS24110 at 733.764 kb on - strand, within RR42_RS24110 at 733.847 kb on + strand, within RR42_RS24110 at 733.847 kb on + strand, within RR42_RS24110 at 733.848 kb on - strand, within RR42_RS24110 at 733.848 kb on - strand, within RR42_RS24110 at 733.848 kb on - strand, within RR42_RS24110 at 733.848 kb on - strand, within RR42_RS24110
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 730,906 - +0.7 730,906 - -1.5 731,137 + RR42_RS24100 0.26 +0.4 731,220 + RR42_RS24100 0.42 +1.2 731,232 + RR42_RS24100 0.45 -0.9 731,232 + RR42_RS24100 0.45 -0.9 731,233 - RR42_RS24100 0.45 +0.7 731,233 - RR42_RS24100 0.45 -1.3 731,330 + RR42_RS24100 0.64 -0.4 731,331 - RR42_RS24100 0.64 +0.7 731,352 + RR42_RS24100 0.68 +0.9 731,352 + RR42_RS24100 0.68 +0.2 731,352 + RR42_RS24100 0.68 -0.5 731,458 + RR42_RS24100 0.89 +0.5 731,512 + -0.5 731,512 + +1.0 731,513 - +0.3 731,513 - +0.4 731,513 - -0.4 731,544 - +0.2 731,544 - -1.7 731,552 + -0.2 731,553 - +0.8 731,553 - +0.2 731,568 + +2.4 731,568 + -0.4 731,569 - -0.4 731,630 - +2.0 731,647 - +0.3 731,647 - +1.4 731,647 - +2.0 731,647 - +0.4 731,895 + -0.6 731,895 + +0.4 731,895 + -1.7 731,896 - +1.0 731,896 - +0.2 731,896 - +1.0 731,902 + +0.1 731,903 - +3.4 731,903 - +0.9 732,017 - RR42_RS24105 0.11 +1.6 732,017 - RR42_RS24105 0.11 +0.5 732,058 + RR42_RS24105 0.14 +1.8 732,058 + RR42_RS24105 0.14 -0.5 732,058 + RR42_RS24105 0.14 +0.7 732,059 - RR42_RS24105 0.14 -0.6 732,059 - RR42_RS24105 0.14 +0.4 732,059 - RR42_RS24105 0.14 -1.0 732,059 - RR42_RS24105 0.14 +0.4 732,059 - RR42_RS24105 0.14 +0.9 732,059 - RR42_RS24105 0.14 +1.1 732,059 - RR42_RS24105 0.14 +0.3 732,137 + RR42_RS24105 0.21 -0.8 732,152 + RR42_RS24105 0.23 +0.5 732,152 + RR42_RS24105 0.23 -1.3 732,173 + RR42_RS24105 0.25 -0.2 732,173 - RR42_RS24105 0.25 -0.9 732,173 - RR42_RS24105 0.25 -1.3 732,175 + RR42_RS24105 0.25 -1.1 732,176 - RR42_RS24105 0.25 +0.0 732,259 + RR42_RS24105 0.32 -1.5 732,288 + RR42_RS24105 0.35 +0.6 732,343 + RR42_RS24105 0.40 +0.8 732,344 - RR42_RS24105 0.40 -0.1 732,356 + RR42_RS24105 0.41 -1.1 732,371 + RR42_RS24105 0.43 +0.2 732,371 + RR42_RS24105 0.43 +0.0 732,372 - RR42_RS24105 0.43 -1.5 732,372 - RR42_RS24105 0.43 -0.1 732,376 + RR42_RS24105 0.43 +0.5 732,377 - RR42_RS24105 0.43 +2.4 732,384 + RR42_RS24105 0.44 -0.2 732,384 + RR42_RS24105 0.44 +0.1 732,385 - RR42_RS24105 0.44 -0.4 732,388 - RR42_RS24105 0.44 -0.5 732,490 + RR42_RS24105 0.53 +0.1 732,490 + RR42_RS24105 0.53 -0.2 732,491 - RR42_RS24105 0.53 -0.1 732,491 - RR42_RS24105 0.53 -1.5 732,491 - RR42_RS24105 0.53 +0.8 732,491 - RR42_RS24105 0.53 -0.8 732,494 + RR42_RS24105 0.54 +0.1 732,529 + RR42_RS24105 0.57 -0.8 732,565 + RR42_RS24105 0.60 -0.1 732,565 + RR42_RS24105 0.60 +0.7 732,565 + RR42_RS24105 0.60 +1.5 732,565 + RR42_RS24105 0.60 +0.1 732,566 - RR42_RS24105 0.60 -0.1 732,566 - RR42_RS24105 0.60 -0.2 732,566 - RR42_RS24105 0.60 -0.6 732,566 - RR42_RS24105 0.60 -0.4 732,566 - RR42_RS24105 0.60 +1.1 732,566 - RR42_RS24105 0.60 -0.9 732,643 + RR42_RS24105 0.67 +1.0 732,643 + RR42_RS24105 0.67 -0.6 732,644 - RR42_RS24105 0.67 +0.8 732,644 - RR42_RS24105 0.67 -0.2 732,644 - RR42_RS24105 0.67 +0.6 732,680 + RR42_RS24105 0.71 -0.5 732,894 + +1.4 733,048 + -1.1 733,121 + +0.5 733,122 - +0.8 733,161 + -0.3 733,172 + +1.0 733,172 + -0.5 733,172 + -0.1 733,192 + -0.4 733,291 - -1.3 733,291 - -0.4 733,318 + +0.4 733,318 + -0.0 733,319 - -0.5 733,372 + -0.8 733,372 + -0.3 733,372 + -0.3 733,373 - -0.6 733,373 - +0.8 733,376 + +0.7 733,377 - +0.3 733,389 - -2.1 733,389 - -1.0 733,391 + -0.6 733,454 - +0.3 733,457 - -0.2 733,516 - +0.1 733,632 - +0.7 733,694 - +0.7 733,695 + +0.3 733,695 + +0.5 733,695 + -0.8 733,695 + +0.9 733,715 + -0.7 733,716 - +0.8 733,716 - -0.4 733,716 - -0.5 733,763 + RR42_RS24110 0.11 -1.4 733,764 - RR42_RS24110 0.11 +0.4 733,847 + RR42_RS24110 0.18 -0.1 733,847 + RR42_RS24110 0.18 -1.5 733,848 - RR42_RS24110 0.18 +0.4 733,848 - RR42_RS24110 0.18 -0.3 733,848 - RR42_RS24110 0.18 +0.1 733,848 - RR42_RS24110 0.18 +0.1
Or see this region's nucleotide sequence