Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23840 and RR42_RS23845 are separated by 361 nucleotides
RR42_RS23840: RR42_RS23840 - hypothetical protein, at 676,858 to 678,453
_RS23840
RR42_RS23845: RR42_RS23845 - hypothetical protein, at 678,815 to 679,075
_RS23845
Position (kb) 678
679
680 Strain fitness (log2 ratio) -2
-1
0
1
2 at 677.846 kb on - strand, within RR42_RS23840 at 677.846 kb on - strand, within RR42_RS23840 at 677.922 kb on - strand, within RR42_RS23840 at 677.932 kb on + strand, within RR42_RS23840 at 677.939 kb on + strand, within RR42_RS23840 at 677.939 kb on + strand, within RR42_RS23840 at 678.015 kb on - strand, within RR42_RS23840 at 678.031 kb on - strand, within RR42_RS23840 at 678.038 kb on + strand, within RR42_RS23840 at 678.104 kb on - strand, within RR42_RS23840 at 678.104 kb on - strand, within RR42_RS23840 at 678.153 kb on - strand, within RR42_RS23840 at 678.171 kb on + strand, within RR42_RS23840 at 678.172 kb on - strand, within RR42_RS23840 at 678.245 kb on + strand, within RR42_RS23840 at 678.246 kb on - strand, within RR42_RS23840 at 678.372 kb on + strand at 678.372 kb on + strand at 678.386 kb on + strand at 678.425 kb on + strand at 678.426 kb on - strand at 678.426 kb on - strand at 678.506 kb on + strand at 678.519 kb on - strand at 678.528 kb on - strand at 678.547 kb on - strand at 678.676 kb on + strand at 678.984 kb on + strand, within RR42_RS23845 at 679.044 kb on + strand, within RR42_RS23845 at 679.065 kb on + strand at 679.379 kb on + strand at 679.380 kb on - strand at 679.512 kb on + strand at 679.516 kb on + strand at 679.559 kb on - strand at 679.559 kb on - strand at 679.578 kb on + strand at 679.579 kb on - strand at 679.602 kb on + strand at 679.603 kb on - strand at 679.603 kb on - strand at 679.636 kb on + strand at 679.637 kb on - strand at 679.678 kb on - strand at 679.678 kb on - strand at 679.749 kb on + strand at 679.749 kb on + strand at 679.749 kb on + strand at 679.749 kb on + strand at 679.750 kb on - strand at 679.750 kb on - strand at 679.750 kb on - strand at 679.750 kb on - strand at 679.751 kb on + strand at 679.751 kb on + strand at 679.751 kb on + strand at 679.752 kb on - strand at 679.752 kb on - strand at 679.752 kb on - strand at 679.752 kb on - strand at 679.752 kb on - strand at 679.781 kb on + strand at 679.781 kb on + strand at 679.781 kb on + strand at 679.782 kb on - strand at 679.808 kb on + strand at 679.809 kb on - strand at 679.826 kb on + strand at 679.826 kb on + strand at 679.826 kb on + strand at 679.827 kb on - strand at 679.841 kb on - strand at 679.870 kb on + strand at 679.870 kb on + strand at 679.871 kb on - strand at 679.892 kb on - strand at 679.914 kb on + strand at 679.914 kb on + strand at 679.914 kb on + strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.953 kb on - strand at 679.970 kb on + strand at 679.970 kb on + strand at 679.971 kb on - strand at 679.971 kb on - strand at 679.971 kb on - strand at 679.971 kb on - strand at 679.971 kb on - strand at 679.971 kb on - strand at 679.971 kb on - strand at 679.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 677,846 - RR42_RS23840 0.62 -0.8 677,846 - RR42_RS23840 0.62 +1.1 677,922 - RR42_RS23840 0.67 -1.0 677,932 + RR42_RS23840 0.67 -0.2 677,939 + RR42_RS23840 0.68 +0.2 677,939 + RR42_RS23840 0.68 +1.4 678,015 - RR42_RS23840 0.72 -0.8 678,031 - RR42_RS23840 0.73 -0.8 678,038 + RR42_RS23840 0.74 -0.5 678,104 - RR42_RS23840 0.78 +0.8 678,104 - RR42_RS23840 0.78 -0.0 678,153 - RR42_RS23840 0.81 +0.8 678,171 + RR42_RS23840 0.82 -0.3 678,172 - RR42_RS23840 0.82 +0.5 678,245 + RR42_RS23840 0.87 +1.4 678,246 - RR42_RS23840 0.87 +0.4 678,372 + +0.1 678,372 + -0.4 678,386 + +0.9 678,425 + -1.4 678,426 - +2.4 678,426 - +0.6 678,506 + +0.5 678,519 - +0.2 678,528 - +0.8 678,547 - +0.2 678,676 + +1.0 678,984 + RR42_RS23845 0.65 +0.9 679,044 + RR42_RS23845 0.88 +1.4 679,065 + +0.1 679,379 + +1.4 679,380 - +0.1 679,512 + +0.1 679,516 + -0.1 679,559 - -1.9 679,559 - -0.8 679,578 + +0.8 679,579 - +1.6 679,602 + -0.3 679,603 - -0.1 679,603 - +0.6 679,636 + -0.7 679,637 - -0.4 679,678 - +0.8 679,678 - -0.4 679,749 + -1.0 679,749 + +2.0 679,749 + +2.4 679,749 + +0.4 679,750 - -0.3 679,750 - +1.4 679,750 - +0.8 679,750 - +0.8 679,751 + -0.2 679,751 + +1.3 679,751 + -0.2 679,752 - +1.3 679,752 - -0.1 679,752 - -0.9 679,752 - +0.8 679,752 - +0.5 679,781 + +1.1 679,781 + +0.4 679,781 + -1.6 679,782 - -1.4 679,808 + +1.2 679,809 - -0.4 679,826 + -1.1 679,826 + +1.0 679,826 + +0.4 679,827 - +0.1 679,841 - +1.1 679,870 + -0.0 679,870 + -0.7 679,871 - -1.1 679,892 - -0.1 679,914 + +0.3 679,914 + -0.2 679,914 + +1.3 679,915 - -0.5 679,915 - -0.3 679,915 - -0.0 679,953 - +0.1 679,970 + -0.2 679,970 + -1.2 679,971 - +0.6 679,971 - +0.4 679,971 - +1.8 679,971 - -0.9 679,971 - -1.1 679,971 - +0.2 679,971 - -0.2 679,971 - +0.1
Or see this region's nucleotide sequence