Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23845

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS23840 and RR42_RS23845 are separated by 361 nucleotides RR42_RS23840: RR42_RS23840 - hypothetical protein, at 676,858 to 678,453 _RS23840 RR42_RS23845: RR42_RS23845 - hypothetical protein, at 678,815 to 679,075 _RS23845 Position (kb) 678 679 680Strain fitness (log2 ratio) -2 -1 0 1 2at 677.846 kb on - strand, within RR42_RS23840at 677.846 kb on - strand, within RR42_RS23840at 677.922 kb on - strand, within RR42_RS23840at 677.932 kb on + strand, within RR42_RS23840at 677.939 kb on + strand, within RR42_RS23840at 677.939 kb on + strand, within RR42_RS23840at 678.015 kb on - strand, within RR42_RS23840at 678.031 kb on - strand, within RR42_RS23840at 678.038 kb on + strand, within RR42_RS23840at 678.104 kb on - strand, within RR42_RS23840at 678.104 kb on - strand, within RR42_RS23840at 678.153 kb on - strand, within RR42_RS23840at 678.171 kb on + strand, within RR42_RS23840at 678.172 kb on - strand, within RR42_RS23840at 678.245 kb on + strand, within RR42_RS23840at 678.246 kb on - strand, within RR42_RS23840at 678.372 kb on + strandat 678.372 kb on + strandat 678.386 kb on + strandat 678.425 kb on + strandat 678.426 kb on - strandat 678.426 kb on - strandat 678.506 kb on + strandat 678.519 kb on - strandat 678.528 kb on - strandat 678.547 kb on - strandat 678.676 kb on + strandat 678.984 kb on + strand, within RR42_RS23845at 679.044 kb on + strand, within RR42_RS23845at 679.065 kb on + strandat 679.379 kb on + strandat 679.380 kb on - strandat 679.512 kb on + strandat 679.516 kb on + strandat 679.559 kb on - strandat 679.559 kb on - strandat 679.578 kb on + strandat 679.579 kb on - strandat 679.602 kb on + strandat 679.603 kb on - strandat 679.603 kb on - strandat 679.636 kb on + strandat 679.637 kb on - strandat 679.678 kb on - strandat 679.678 kb on - strandat 679.749 kb on + strandat 679.749 kb on + strandat 679.749 kb on + strandat 679.749 kb on + strandat 679.750 kb on - strandat 679.750 kb on - strandat 679.750 kb on - strandat 679.750 kb on - strandat 679.751 kb on + strandat 679.751 kb on + strandat 679.751 kb on + strandat 679.752 kb on - strandat 679.752 kb on - strandat 679.752 kb on - strandat 679.752 kb on - strandat 679.752 kb on - strandat 679.781 kb on + strandat 679.781 kb on + strandat 679.781 kb on + strandat 679.782 kb on - strandat 679.808 kb on + strandat 679.809 kb on - strandat 679.826 kb on + strandat 679.826 kb on + strandat 679.826 kb on + strandat 679.827 kb on - strandat 679.841 kb on - strandat 679.870 kb on + strandat 679.870 kb on + strandat 679.871 kb on - strandat 679.892 kb on - strandat 679.914 kb on + strandat 679.914 kb on + strandat 679.914 kb on + strandat 679.915 kb on - strandat 679.915 kb on - strandat 679.915 kb on - strandat 679.953 kb on - strandat 679.970 kb on + strandat 679.970 kb on + strandat 679.971 kb on - strandat 679.971 kb on - strandat 679.971 kb on - strandat 679.971 kb on - strandat 679.971 kb on - strandat 679.971 kb on - strandat 679.971 kb on - strandat 679.971 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
remove
677,846 - RR42_RS23840 0.62 -0.8
677,846 - RR42_RS23840 0.62 +1.1
677,922 - RR42_RS23840 0.67 -1.0
677,932 + RR42_RS23840 0.67 -0.2
677,939 + RR42_RS23840 0.68 +0.2
677,939 + RR42_RS23840 0.68 +1.4
678,015 - RR42_RS23840 0.72 -0.8
678,031 - RR42_RS23840 0.73 -0.8
678,038 + RR42_RS23840 0.74 -0.5
678,104 - RR42_RS23840 0.78 +0.8
678,104 - RR42_RS23840 0.78 -0.0
678,153 - RR42_RS23840 0.81 +0.8
678,171 + RR42_RS23840 0.82 -0.3
678,172 - RR42_RS23840 0.82 +0.5
678,245 + RR42_RS23840 0.87 +1.4
678,246 - RR42_RS23840 0.87 +0.4
678,372 + +0.1
678,372 + -0.4
678,386 + +0.9
678,425 + -1.4
678,426 - +2.4
678,426 - +0.6
678,506 + +0.5
678,519 - +0.2
678,528 - +0.8
678,547 - +0.2
678,676 + +1.0
678,984 + RR42_RS23845 0.65 +0.9
679,044 + RR42_RS23845 0.88 +1.4
679,065 + +0.1
679,379 + +1.4
679,380 - +0.1
679,512 + +0.1
679,516 + -0.1
679,559 - -1.9
679,559 - -0.8
679,578 + +0.8
679,579 - +1.6
679,602 + -0.3
679,603 - -0.1
679,603 - +0.6
679,636 + -0.7
679,637 - -0.4
679,678 - +0.8
679,678 - -0.4
679,749 + -1.0
679,749 + +2.0
679,749 + +2.4
679,749 + +0.4
679,750 - -0.3
679,750 - +1.4
679,750 - +0.8
679,750 - +0.8
679,751 + -0.2
679,751 + +1.3
679,751 + -0.2
679,752 - +1.3
679,752 - -0.1
679,752 - -0.9
679,752 - +0.8
679,752 - +0.5
679,781 + +1.1
679,781 + +0.4
679,781 + -1.6
679,782 - -1.4
679,808 + +1.2
679,809 - -0.4
679,826 + -1.1
679,826 + +1.0
679,826 + +0.4
679,827 - +0.1
679,841 - +1.1
679,870 + -0.0
679,870 + -0.7
679,871 - -1.1
679,892 - -0.1
679,914 + +0.3
679,914 + -0.2
679,914 + +1.3
679,915 - -0.5
679,915 - -0.3
679,915 - -0.0
679,953 - +0.1
679,970 + -0.2
679,970 + -1.2
679,971 - +0.6
679,971 - +0.4
679,971 - +1.8
679,971 - -0.9
679,971 - -1.1
679,971 - +0.2
679,971 - -0.2
679,971 - +0.1

Or see this region's nucleotide sequence