Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23085 and RR42_RS23090 are separated by 33 nucleotides RR42_RS23090 and RR42_RS23095 are separated by 92 nucleotides RR42_RS23095 and RR42_RS23100 are separated by 89 nucleotides
RR42_RS23085: RR42_RS23085 - cytochrome C biogenesis protein CcdA, at 513,751 to 514,677
_RS23085
RR42_RS23090: RR42_RS23090 - 2,5-dioxovalerate dehydrogenase, at 514,711 to 516,312
_RS23090
RR42_RS23095: RR42_RS23095 - Zn-dependent hydrolase, at 516,405 to 517,169
_RS23095
RR42_RS23100: RR42_RS23100 - AraC family transcriptional regulator, at 517,259 to 518,224
_RS23100
Position (kb) 514
515
516
517 Strain fitness (log2 ratio) -2
-1
0
1
2 at 513.760 kb on - strand at 513.773 kb on - strand at 513.773 kb on - strand at 513.783 kb on - strand at 514.123 kb on + strand, within RR42_RS23085 at 514.123 kb on + strand, within RR42_RS23085 at 514.124 kb on - strand, within RR42_RS23085 at 514.124 kb on - strand, within RR42_RS23085 at 514.124 kb on - strand, within RR42_RS23085 at 514.158 kb on + strand, within RR42_RS23085 at 514.253 kb on - strand, within RR42_RS23085 at 514.284 kb on - strand, within RR42_RS23085 at 514.478 kb on - strand, within RR42_RS23085 at 514.478 kb on - strand, within RR42_RS23085 at 514.504 kb on + strand, within RR42_RS23085 at 514.504 kb on + strand, within RR42_RS23085 at 514.504 kb on + strand, within RR42_RS23085 at 514.505 kb on - strand, within RR42_RS23085 at 514.505 kb on - strand, within RR42_RS23085 at 515.018 kb on + strand, within RR42_RS23090 at 515.284 kb on - strand, within RR42_RS23090 at 515.497 kb on + strand, within RR42_RS23090 at 515.815 kb on + strand, within RR42_RS23090 at 515.816 kb on - strand, within RR42_RS23090 at 516.116 kb on - strand, within RR42_RS23090 at 516.142 kb on - strand, within RR42_RS23090 at 516.142 kb on - strand, within RR42_RS23090 at 516.190 kb on + strand at 516.191 kb on - strand at 516.304 kb on - strand at 516.428 kb on + strand at 516.428 kb on + strand at 516.675 kb on + strand, within RR42_RS23095 at 516.695 kb on - strand, within RR42_RS23095 at 516.695 kb on - strand, within RR42_RS23095 at 516.715 kb on - strand, within RR42_RS23095 at 516.715 kb on - strand, within RR42_RS23095 at 516.872 kb on - strand, within RR42_RS23095 at 517.163 kb on + strand at 517.163 kb on + strand at 517.163 kb on + strand at 517.163 kb on + strand at 517.164 kb on - strand at 517.164 kb on - strand at 517.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 513,760 - -0.3 513,773 - -0.1 513,773 - +0.9 513,783 - -0.1 514,123 + RR42_RS23085 0.40 -0.1 514,123 + RR42_RS23085 0.40 -0.1 514,124 - RR42_RS23085 0.40 +0.2 514,124 - RR42_RS23085 0.40 -0.2 514,124 - RR42_RS23085 0.40 -0.4 514,158 + RR42_RS23085 0.44 -0.2 514,253 - RR42_RS23085 0.54 -0.3 514,284 - RR42_RS23085 0.57 -1.3 514,478 - RR42_RS23085 0.78 -0.1 514,478 - RR42_RS23085 0.78 -0.2 514,504 + RR42_RS23085 0.81 -2.2 514,504 + RR42_RS23085 0.81 -0.7 514,504 + RR42_RS23085 0.81 -0.5 514,505 - RR42_RS23085 0.81 -0.5 514,505 - RR42_RS23085 0.81 +2.5 515,018 + RR42_RS23090 0.19 +0.4 515,284 - RR42_RS23090 0.36 +0.7 515,497 + RR42_RS23090 0.49 -0.5 515,815 + RR42_RS23090 0.69 -0.9 515,816 - RR42_RS23090 0.69 -0.6 516,116 - RR42_RS23090 0.88 +2.1 516,142 - RR42_RS23090 0.89 -0.0 516,142 - RR42_RS23090 0.89 +0.5 516,190 + -0.2 516,191 - -0.4 516,304 - -0.7 516,428 + -0.7 516,428 + -1.1 516,675 + RR42_RS23095 0.35 +0.2 516,695 - RR42_RS23095 0.38 -0.1 516,695 - RR42_RS23095 0.38 +0.7 516,715 - RR42_RS23095 0.41 -0.2 516,715 - RR42_RS23095 0.41 -0.4 516,872 - RR42_RS23095 0.61 -0.9 517,163 + +0.9 517,163 + +0.5 517,163 + -0.9 517,163 + +0.7 517,164 - +0.4 517,164 - -0.3 517,164 - +1.1
Or see this region's nucleotide sequence