Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23030 and RR42_RS23035 are separated by 180 nucleotides RR42_RS23035 and RR42_RS23040 are separated by 398 nucleotides RR42_RS23040 and RR42_RS23045 are separated by 165 nucleotides
RR42_RS23030: RR42_RS23030 - hypothetical protein, at 502,329 to 502,700
_RS23030
RR42_RS23035: RR42_RS23035 - sporulation protein, at 502,881 to 503,831
_RS23035
RR42_RS23040: RR42_RS23040 - hypothetical protein, at 504,230 to 504,514
_RS23040
RR42_RS23045: RR42_RS23045 - LysR family transcriptional regulator, at 504,680 to 505,585
_RS23045
Position (kb) 502
503
504 Strain fitness (log2 ratio) -2
-1
0
1
2 at 501.931 kb on - strand at 501.931 kb on - strand at 501.937 kb on + strand at 502.146 kb on - strand at 502.146 kb on - strand at 502.164 kb on + strand at 502.269 kb on - strand at 502.414 kb on - strand, within RR42_RS23030 at 502.414 kb on - strand, within RR42_RS23030 at 502.468 kb on + strand, within RR42_RS23030 at 502.469 kb on - strand, within RR42_RS23030 at 502.469 kb on - strand, within RR42_RS23030 at 502.469 kb on - strand, within RR42_RS23030 at 502.469 kb on - strand, within RR42_RS23030 at 502.469 kb on - strand, within RR42_RS23030 at 502.481 kb on - strand, within RR42_RS23030 at 502.501 kb on + strand, within RR42_RS23030 at 502.613 kb on + strand, within RR42_RS23030 at 502.613 kb on + strand, within RR42_RS23030 at 502.613 kb on + strand, within RR42_RS23030 at 502.614 kb on - strand, within RR42_RS23030 at 502.665 kb on + strand at 502.666 kb on - strand at 502.714 kb on - strand at 502.766 kb on + strand at 502.767 kb on + strand at 502.767 kb on + strand at 502.767 kb on + strand at 502.768 kb on - strand at 502.768 kb on - strand at 502.804 kb on + strand at 502.805 kb on - strand at 502.837 kb on - strand at 503.223 kb on + strand, within RR42_RS23035 at 503.224 kb on - strand, within RR42_RS23035 at 503.373 kb on + strand, within RR42_RS23035 at 503.598 kb on + strand, within RR42_RS23035 at 503.771 kb on + strand at 503.900 kb on + strand at 503.906 kb on + strand at 503.907 kb on - strand at 503.932 kb on + strand at 503.957 kb on + strand at 503.958 kb on - strand at 503.995 kb on - strand at 504.017 kb on + strand at 504.034 kb on + strand at 504.035 kb on - strand at 504.035 kb on - strand at 504.035 kb on - strand at 504.084 kb on - strand at 504.084 kb on - strand at 504.085 kb on + strand at 504.085 kb on + strand at 504.085 kb on + strand at 504.085 kb on + strand at 504.086 kb on - strand at 504.087 kb on + strand at 504.088 kb on - strand at 504.088 kb on - strand at 504.175 kb on + strand at 504.176 kb on - strand at 504.214 kb on - strand at 504.222 kb on + strand at 504.223 kb on - strand at 504.239 kb on - strand at 504.473 kb on + strand, within RR42_RS23040 at 504.478 kb on + strand, within RR42_RS23040 at 504.536 kb on + strand at 504.536 kb on + strand at 504.536 kb on + strand at 504.539 kb on + strand at 504.540 kb on - strand at 504.540 kb on - strand at 504.543 kb on + strand at 504.543 kb on + strand at 504.543 kb on + strand at 504.547 kb on + strand at 504.547 kb on + strand at 504.547 kb on + strand at 504.548 kb on - strand at 504.548 kb on - strand at 504.586 kb on - strand at 504.586 kb on - strand at 504.586 kb on - strand at 504.635 kb on - strand at 504.682 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 501,931 - -1.2 501,931 - +1.5 501,937 + -1.6 502,146 - -1.0 502,146 - +0.1 502,164 + -0.1 502,269 - -0.9 502,414 - RR42_RS23030 0.23 +0.3 502,414 - RR42_RS23030 0.23 +0.7 502,468 + RR42_RS23030 0.37 +0.1 502,469 - RR42_RS23030 0.38 -0.3 502,469 - RR42_RS23030 0.38 +1.0 502,469 - RR42_RS23030 0.38 +0.0 502,469 - RR42_RS23030 0.38 -0.4 502,469 - RR42_RS23030 0.38 +0.4 502,481 - RR42_RS23030 0.41 -1.4 502,501 + RR42_RS23030 0.46 -0.7 502,613 + RR42_RS23030 0.76 -0.9 502,613 + RR42_RS23030 0.76 -0.2 502,613 + RR42_RS23030 0.76 +0.6 502,614 - RR42_RS23030 0.77 -0.1 502,665 + -2.0 502,666 - +0.1 502,714 - -0.4 502,766 + -1.4 502,767 + +0.7 502,767 + +0.0 502,767 + +0.1 502,768 - -0.6 502,768 - +0.3 502,804 + -0.2 502,805 - +1.0 502,837 - +0.5 503,223 + RR42_RS23035 0.36 +1.5 503,224 - RR42_RS23035 0.36 +0.3 503,373 + RR42_RS23035 0.52 +1.7 503,598 + RR42_RS23035 0.75 -1.7 503,771 + -0.6 503,900 + -1.0 503,906 + +1.5 503,907 - +0.7 503,932 + -0.4 503,957 + +1.2 503,958 - +0.4 503,995 - -0.1 504,017 + -0.5 504,034 + +0.0 504,035 - -1.0 504,035 - -0.1 504,035 - -0.2 504,084 - -1.3 504,084 - +1.4 504,085 + +0.1 504,085 + +0.2 504,085 + -0.7 504,085 + -0.3 504,086 - -0.8 504,087 + +1.2 504,088 - -0.8 504,088 - +0.0 504,175 + +0.3 504,176 - +0.9 504,214 - -1.1 504,222 + +0.5 504,223 - +0.2 504,239 - +0.5 504,473 + RR42_RS23040 0.85 -0.2 504,478 + RR42_RS23040 0.87 -0.6 504,536 + -0.8 504,536 + -0.3 504,536 + +0.7 504,539 + +0.8 504,540 - -0.0 504,540 - +1.3 504,543 + -0.5 504,543 + +1.5 504,543 + +0.0 504,547 + +0.5 504,547 + +0.6 504,547 + -1.1 504,548 - -0.8 504,548 - +1.9 504,586 - -0.3 504,586 - -0.3 504,586 - +0.0 504,635 - +0.3 504,682 - +0.2
Or see this region's nucleotide sequence