Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22915 and RR42_RS22920 are separated by 69 nucleotides RR42_RS22920 and RR42_RS22925 are separated by 95 nucleotides RR42_RS22925 and RR42_RS22930 overlap by 1 nucleotides
RR42_RS22915: RR42_RS22915 - ABC transporter permease, at 473,678 to 474,517
_RS22915
RR42_RS22920: RR42_RS22920 - hypothetical protein, at 474,587 to 475,024
_RS22920
RR42_RS22925: RR42_RS22925 - RND transporter, at 475,120 to 476,193
_RS22925
RR42_RS22930: RR42_RS22930 - cytochrome C peroxidase, at 476,193 to 479,342
_RS22930
Position (kb) 475
476
477 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10 at 474.174 kb on + strand, within RR42_RS22915 at 474.174 kb on + strand, within RR42_RS22915 at 474.174 kb on + strand, within RR42_RS22915 at 474.175 kb on - strand, within RR42_RS22915 at 474.659 kb on - strand, within RR42_RS22920 at 474.744 kb on - strand, within RR42_RS22920 at 475.199 kb on + strand at 475.200 kb on - strand at 475.302 kb on - strand, within RR42_RS22925 at 475.302 kb on - strand, within RR42_RS22925 at 475.318 kb on + strand, within RR42_RS22925 at 475.336 kb on + strand, within RR42_RS22925 at 475.337 kb on - strand, within RR42_RS22925 at 475.337 kb on - strand, within RR42_RS22925 at 476.014 kb on + strand, within RR42_RS22925 at 476.284 kb on - strand at 476.454 kb on + strand at 476.503 kb on - strand at 476.503 kb on - strand at 476.503 kb on - strand at 476.707 kb on + strand, within RR42_RS22930 at 476.708 kb on - strand, within RR42_RS22930 at 476.745 kb on + strand, within RR42_RS22930 at 476.789 kb on + strand, within RR42_RS22930 at 477.168 kb on + strand, within RR42_RS22930 at 477.169 kb on - strand, within RR42_RS22930
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 474,174 + RR42_RS22915 0.59 -0.6 474,174 + RR42_RS22915 0.59 +0.8 474,174 + RR42_RS22915 0.59 +1.2 474,175 - RR42_RS22915 0.59 +0.0 474,659 - RR42_RS22920 0.16 +0.1 474,744 - RR42_RS22920 0.36 +0.5 475,199 + +2.7 475,200 - -1.3 475,302 - RR42_RS22925 0.17 -0.1 475,302 - RR42_RS22925 0.17 +1.0 475,318 + RR42_RS22925 0.18 +0.5 475,336 + RR42_RS22925 0.20 +1.1 475,337 - RR42_RS22925 0.20 +9.8 475,337 - RR42_RS22925 0.20 -1.8 476,014 + RR42_RS22925 0.83 +0.1 476,284 - -1.3 476,454 + -0.3 476,503 - -1.1 476,503 - -1.1 476,503 - +1.6 476,707 + RR42_RS22930 0.16 -1.5 476,708 - RR42_RS22930 0.16 -1.9 476,745 + RR42_RS22930 0.18 +0.4 476,789 + RR42_RS22930 0.19 -0.2 477,168 + RR42_RS22930 0.31 -0.7 477,169 - RR42_RS22930 0.31 +0.2
Or see this region's nucleotide sequence