Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22390 and RR42_RS22395 are separated by 312 nucleotides RR42_RS22395 and RR42_RS22400 are separated by 112 nucleotides RR42_RS22400 and RR42_RS22405 are separated by 202 nucleotides
RR42_RS22390: RR42_RS22390 - 3-oxoacyl-ACP reductase, at 359,562 to 360,344
_RS22390
RR42_RS22395: RR42_RS22395 - hypothetical protein, at 360,657 to 361,688
_RS22395
RR42_RS22400: RR42_RS22400 - FMN reductase, at 361,801 to 362,421
_RS22400
RR42_RS22405: RR42_RS22405 - hypothetical protein, at 362,624 to 362,929
_RS22405
Position (kb) 360
361
362 Strain fitness (log2 ratio) -2
-1
0
1
2 at 359.863 kb on + strand, within RR42_RS22390 at 359.864 kb on - strand, within RR42_RS22390 at 359.864 kb on - strand, within RR42_RS22390 at 359.864 kb on - strand, within RR42_RS22390 at 360.586 kb on + strand at 360.587 kb on - strand at 360.587 kb on - strand at 360.818 kb on + strand, within RR42_RS22395 at 361.153 kb on + strand, within RR42_RS22395 at 361.529 kb on - strand, within RR42_RS22395 at 361.730 kb on - strand at 361.777 kb on - strand at 361.784 kb on + strand at 361.784 kb on + strand at 361.785 kb on - strand at 361.785 kb on - strand at 361.785 kb on - strand at 362.225 kb on + strand, within RR42_RS22400 at 362.225 kb on + strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.407 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 359,863 + RR42_RS22390 0.38 +0.1 359,864 - RR42_RS22390 0.39 -0.1 359,864 - RR42_RS22390 0.39 -0.2 359,864 - RR42_RS22390 0.39 +1.0 360,586 + -0.7 360,587 - +0.2 360,587 - +0.1 360,818 + RR42_RS22395 0.16 -1.5 361,153 + RR42_RS22395 0.48 -1.1 361,529 - RR42_RS22395 0.84 -2.1 361,730 - +0.4 361,777 - +0.0 361,784 + -0.4 361,784 + -0.4 361,785 - -0.3 361,785 - -0.1 361,785 - +2.1 362,225 + RR42_RS22400 0.68 -1.0 362,225 + RR42_RS22400 0.68 -1.3 362,226 - RR42_RS22400 0.68 -0.1 362,226 - RR42_RS22400 0.68 +0.9 362,226 - RR42_RS22400 0.68 -0.1 362,226 - RR42_RS22400 0.68 -0.1 362,226 - RR42_RS22400 0.68 -1.6 362,226 - RR42_RS22400 0.68 +1.5 362,407 - +0.5
Or see this region's nucleotide sequence