Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22295 and RR42_RS22300 are separated by 226 nucleotides RR42_RS22300 and RR42_RS22305 are separated by 20 nucleotides RR42_RS22305 and RR42_RS22310 are separated by 12 nucleotides
RR42_RS22295: RR42_RS22295 - methionine sulfoxide reductase B, at 343,274 to 343,813
_RS22295
RR42_RS22300: RR42_RS22300 - chemotaxis protein CheY, at 344,040 to 344,762
_RS22300
RR42_RS22305: RR42_RS22305 - histidine kinase, at 344,783 to 346,276
_RS22305
RR42_RS22310: RR42_RS22310 - LysR family transcriptional regulator, at 346,289 to 347,188
_RS22310
Position (kb) 344
345
346
347 Strain fitness (log2 ratio) -2
-1
0
1
2 at 343.835 kb on + strand at 343.835 kb on + strand at 343.893 kb on + strand at 343.894 kb on - strand at 343.894 kb on - strand at 343.934 kb on + strand at 343.972 kb on - strand at 344.095 kb on + strand at 344.095 kb on + strand at 344.096 kb on - strand at 344.096 kb on - strand at 344.124 kb on + strand, within RR42_RS22300 at 344.125 kb on - strand, within RR42_RS22300 at 344.265 kb on + strand, within RR42_RS22300 at 344.266 kb on - strand, within RR42_RS22300 at 344.343 kb on + strand, within RR42_RS22300 at 344.343 kb on + strand, within RR42_RS22300 at 344.344 kb on - strand, within RR42_RS22300 at 344.544 kb on + strand, within RR42_RS22300 at 344.633 kb on + strand, within RR42_RS22300 at 344.633 kb on + strand, within RR42_RS22300 at 344.634 kb on - strand, within RR42_RS22300 at 344.634 kb on - strand, within RR42_RS22300 at 344.648 kb on + strand, within RR42_RS22300 at 344.648 kb on + strand, within RR42_RS22300 at 344.648 kb on + strand, within RR42_RS22300 at 344.724 kb on + strand at 344.724 kb on + strand at 344.725 kb on - strand at 345.034 kb on - strand, within RR42_RS22305 at 345.041 kb on + strand, within RR42_RS22305 at 345.041 kb on + strand, within RR42_RS22305 at 345.042 kb on - strand, within RR42_RS22305 at 345.244 kb on + strand, within RR42_RS22305 at 345.245 kb on + strand, within RR42_RS22305 at 345.251 kb on + strand, within RR42_RS22305 at 345.251 kb on + strand, within RR42_RS22305 at 345.251 kb on + strand, within RR42_RS22305 at 345.251 kb on + strand, within RR42_RS22305 at 345.252 kb on - strand, within RR42_RS22305 at 345.252 kb on - strand, within RR42_RS22305 at 345.252 kb on - strand, within RR42_RS22305 at 345.607 kb on + strand, within RR42_RS22305 at 345.651 kb on - strand, within RR42_RS22305 at 345.708 kb on - strand, within RR42_RS22305 at 345.708 kb on - strand, within RR42_RS22305 at 346.220 kb on - strand at 346.220 kb on - strand at 346.363 kb on - strand at 346.381 kb on - strand, within RR42_RS22310 at 346.463 kb on - strand, within RR42_RS22310 at 346.528 kb on + strand, within RR42_RS22310 at 346.528 kb on + strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 347.069 kb on - strand, within RR42_RS22310 at 347.069 kb on - strand, within RR42_RS22310 at 347.070 kb on + strand, within RR42_RS22310 at 347.070 kb on + strand, within RR42_RS22310 at 347.071 kb on - strand, within RR42_RS22310 at 347.071 kb on - strand, within RR42_RS22310 at 347.200 kb on + strand at 347.219 kb on + strand at 347.219 kb on + strand at 347.254 kb on - strand at 347.259 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 343,835 + -0.5 343,835 + +1.4 343,893 + +0.0 343,894 - +2.5 343,894 - -0.5 343,934 + -1.6 343,972 - +0.5 344,095 + +1.2 344,095 + +1.9 344,096 - -0.1 344,096 - -1.5 344,124 + RR42_RS22300 0.12 +0.4 344,125 - RR42_RS22300 0.12 -0.5 344,265 + RR42_RS22300 0.31 +0.3 344,266 - RR42_RS22300 0.31 -0.5 344,343 + RR42_RS22300 0.42 +0.1 344,343 + RR42_RS22300 0.42 -0.0 344,344 - RR42_RS22300 0.42 +1.5 344,544 + RR42_RS22300 0.70 +1.9 344,633 + RR42_RS22300 0.82 +0.9 344,633 + RR42_RS22300 0.82 -0.7 344,634 - RR42_RS22300 0.82 +0.3 344,634 - RR42_RS22300 0.82 -1.7 344,648 + RR42_RS22300 0.84 -0.9 344,648 + RR42_RS22300 0.84 +2.1 344,648 + RR42_RS22300 0.84 +0.1 344,724 + -0.2 344,724 + +1.2 344,725 - +0.9 345,034 - RR42_RS22305 0.17 -0.7 345,041 + RR42_RS22305 0.17 -1.9 345,041 + RR42_RS22305 0.17 -1.1 345,042 - RR42_RS22305 0.17 +1.8 345,244 + RR42_RS22305 0.31 -0.7 345,245 + RR42_RS22305 0.31 +0.3 345,251 + RR42_RS22305 0.31 +0.3 345,251 + RR42_RS22305 0.31 -1.5 345,251 + RR42_RS22305 0.31 -1.1 345,251 + RR42_RS22305 0.31 -0.6 345,252 - RR42_RS22305 0.31 -1.6 345,252 - RR42_RS22305 0.31 -0.7 345,252 - RR42_RS22305 0.31 -1.4 345,607 + RR42_RS22305 0.55 -0.2 345,651 - RR42_RS22305 0.58 -1.8 345,708 - RR42_RS22305 0.62 -1.1 345,708 - RR42_RS22305 0.62 +0.5 346,220 - -1.8 346,220 - -0.1 346,363 - -0.3 346,381 - RR42_RS22310 0.10 -0.1 346,463 - RR42_RS22310 0.19 -0.6 346,528 + RR42_RS22310 0.27 -0.4 346,528 + RR42_RS22310 0.27 -0.3 346,529 - RR42_RS22310 0.27 -1.2 346,529 - RR42_RS22310 0.27 +0.2 346,529 - RR42_RS22310 0.27 +1.5 347,069 - RR42_RS22310 0.87 +0.3 347,069 - RR42_RS22310 0.87 -0.2 347,070 + RR42_RS22310 0.87 -1.4 347,070 + RR42_RS22310 0.87 -0.3 347,071 - RR42_RS22310 0.87 +0.4 347,071 - RR42_RS22310 0.87 +0.1 347,200 + -0.4 347,219 + +0.1 347,219 + -0.3 347,254 - +0.3 347,259 + -0.7
Or see this region's nucleotide sequence