Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22165

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22160 and RR42_RS22165 are separated by 432 nucleotidesRR42_RS22165 and RR42_RS22170 are separated by 73 nucleotidesRR42_RS22170 and RR42_RS22175 are separated by 130 nucleotides RR42_RS22160: RR42_RS22160 - amine dehydrogenase, at 309,683 to 310,828 _RS22160 RR42_RS22165: RR42_RS22165 - hypothetical protein, at 311,261 to 311,443 _RS22165 RR42_RS22170: RR42_RS22170 - translation initiation factor SUI1, at 311,517 to 311,879 _RS22170 RR42_RS22175: RR42_RS22175 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 312,010 to 312,876 _RS22175 Position (kb) 311 312Strain fitness (log2 ratio) -2 -1 0 1 2 3at 310.295 kb on + strand, within RR42_RS22160at 310.295 kb on + strand, within RR42_RS22160at 310.296 kb on - strand, within RR42_RS22160at 310.296 kb on - strand, within RR42_RS22160at 310.296 kb on - strand, within RR42_RS22160at 310.392 kb on + strand, within RR42_RS22160at 310.393 kb on - strand, within RR42_RS22160at 310.503 kb on + strand, within RR42_RS22160at 310.504 kb on - strand, within RR42_RS22160at 310.504 kb on - strand, within RR42_RS22160at 310.566 kb on + strand, within RR42_RS22160at 310.566 kb on + strand, within RR42_RS22160at 310.566 kb on + strand, within RR42_RS22160at 310.566 kb on + strand, within RR42_RS22160at 310.566 kb on + strand, within RR42_RS22160at 310.566 kb on + strand, within RR42_RS22160at 310.566 kb on + strand, within RR42_RS22160at 310.567 kb on - strand, within RR42_RS22160at 310.567 kb on - strand, within RR42_RS22160at 310.567 kb on - strand, within RR42_RS22160at 310.704 kb on + strand, within RR42_RS22160at 310.705 kb on - strand, within RR42_RS22160at 310.842 kb on - strandat 310.850 kb on + strandat 310.886 kb on + strandat 310.886 kb on + strandat 310.887 kb on - strandat 310.887 kb on - strandat 310.887 kb on - strandat 310.887 kb on - strandat 311.105 kb on - strandat 311.130 kb on + strandat 311.237 kb on + strandat 311.237 kb on + strandat 311.238 kb on - strandat 311.238 kb on - strandat 311.238 kb on - strandat 311.251 kb on + strandat 311.253 kb on + strandat 311.254 kb on - strandat 311.273 kb on + strandat 311.273 kb on + strandat 311.274 kb on - strandat 311.274 kb on - strandat 311.274 kb on - strandat 311.275 kb on + strandat 311.276 kb on - strandat 311.276 kb on - strandat 311.423 kb on + strand, within RR42_RS22165at 311.424 kb on - strand, within RR42_RS22165at 311.424 kb on - strand, within RR42_RS22165at 311.845 kb on + strandat 311.846 kb on - strandat 311.931 kb on + strandat 311.932 kb on - strandat 311.932 kb on - strandat 312.020 kb on + strandat 312.137 kb on + strand, within RR42_RS22175at 312.255 kb on + strand, within RR42_RS22175at 312.255 kb on + strand, within RR42_RS22175at 312.256 kb on - strand, within RR42_RS22175at 312.362 kb on + strand, within RR42_RS22175at 312.362 kb on + strand, within RR42_RS22175at 312.362 kb on + strand, within RR42_RS22175at 312.362 kb on + strand, within RR42_RS22175at 312.363 kb on - strand, within RR42_RS22175at 312.363 kb on - strand, within RR42_RS22175

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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310,295 + RR42_RS22160 0.53 -0.7
310,295 + RR42_RS22160 0.53 -0.4
310,296 - RR42_RS22160 0.53 +1.0
310,296 - RR42_RS22160 0.53 +0.4
310,296 - RR42_RS22160 0.53 +0.1
310,392 + RR42_RS22160 0.62 -0.6
310,393 - RR42_RS22160 0.62 -1.9
310,503 + RR42_RS22160 0.72 +0.1
310,504 - RR42_RS22160 0.72 +0.2
310,504 - RR42_RS22160 0.72 -0.6
310,566 + RR42_RS22160 0.77 +0.0
310,566 + RR42_RS22160 0.77 +0.2
310,566 + RR42_RS22160 0.77 +0.2
310,566 + RR42_RS22160 0.77 +0.8
310,566 + RR42_RS22160 0.77 +0.4
310,566 + RR42_RS22160 0.77 +0.2
310,566 + RR42_RS22160 0.77 -0.3
310,567 - RR42_RS22160 0.77 +1.4
310,567 - RR42_RS22160 0.77 +1.0
310,567 - RR42_RS22160 0.77 +0.9
310,704 + RR42_RS22160 0.89 -1.2
310,705 - RR42_RS22160 0.89 +0.1
310,842 - -0.7
310,850 + +0.0
310,886 + -0.9
310,886 + -0.7
310,887 - +0.7
310,887 - -2.0
310,887 - -0.8
310,887 - -1.4
311,105 - +0.5
311,130 + +2.2
311,237 + +0.5
311,237 + -0.4
311,238 - -1.4
311,238 - -1.0
311,238 - +0.3
311,251 + -0.7
311,253 + -0.1
311,254 - -0.5
311,273 + +1.2
311,273 + -0.3
311,274 - -0.3
311,274 - +0.5
311,274 - -1.2
311,275 + -1.5
311,276 - +0.5
311,276 - +0.3
311,423 + RR42_RS22165 0.89 +0.2
311,424 - RR42_RS22165 0.89 +3.5
311,424 - RR42_RS22165 0.89 +0.8
311,845 + -0.3
311,846 - +0.2
311,931 + +1.1
311,932 - -2.0
311,932 - -0.1
312,020 + +0.6
312,137 + RR42_RS22175 0.15 +0.7
312,255 + RR42_RS22175 0.28 +1.7
312,255 + RR42_RS22175 0.28 -0.5
312,256 - RR42_RS22175 0.28 -0.5
312,362 + RR42_RS22175 0.41 -0.5
312,362 + RR42_RS22175 0.41 +0.5
312,362 + RR42_RS22175 0.41 -0.4
312,362 + RR42_RS22175 0.41 +0.0
312,363 - RR42_RS22175 0.41 +0.6
312,363 - RR42_RS22175 0.41 +0.1

Or see this region's nucleotide sequence