Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21910 and RR42_RS21915 are separated by 78 nucleotides RR42_RS21915 and RR42_RS21920 are separated by 209 nucleotides RR42_RS21920 and RR42_RS21925 are separated by 168 nucleotides RR42_RS21925 and RR42_RS21930 are separated by 170 nucleotides
RR42_RS21910: RR42_RS21910 - tRNA-Asp, at 243,466 to 243,542
_RS21910
RR42_RS21915: RR42_RS21915 - tRNA-Glu, at 243,621 to 243,696
_RS21915
RR42_RS21920: RR42_RS21920 - hypothetical protein, at 243,906 to 244,307
_RS21920
RR42_RS21925: RR42_RS21925 - membrane protein, at 244,476 to 245,003
_RS21925
RR42_RS21930: RR42_RS21930 - hypothetical protein, at 245,174 to 246,007
_RS21930
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1
2 at 243.534 kb on + strand, within RR42_RS21910 at 243.698 kb on + strand at 243.698 kb on + strand at 243.698 kb on + strand at 243.749 kb on + strand at 243.749 kb on + strand at 243.783 kb on + strand at 243.784 kb on - strand at 243.784 kb on - strand at 243.821 kb on + strand at 243.827 kb on + strand at 243.827 kb on + strand at 243.827 kb on + strand at 243.828 kb on - strand at 243.828 kb on - strand at 244.358 kb on - strand at 244.373 kb on + strand at 244.373 kb on + strand at 244.474 kb on + strand at 244.474 kb on + strand at 244.475 kb on - strand at 244.475 kb on - strand at 244.567 kb on - strand, within RR42_RS21925 at 244.679 kb on + strand, within RR42_RS21925 at 244.974 kb on + strand at 244.975 kb on - strand at 244.975 kb on - strand at 244.975 kb on - strand at 245.346 kb on + strand, within RR42_RS21930 at 245.346 kb on + strand, within RR42_RS21930 at 245.346 kb on + strand, within RR42_RS21930 at 245.347 kb on - strand, within RR42_RS21930 at 245.598 kb on + strand, within RR42_RS21930 at 245.849 kb on - strand, within RR42_RS21930 at 245.898 kb on + strand, within RR42_RS21930 at 245.898 kb on + strand, within RR42_RS21930 at 245.899 kb on - strand, within RR42_RS21930 at 245.899 kb on - strand, within RR42_RS21930 at 245.899 kb on - strand, within RR42_RS21930 at 245.910 kb on + strand, within RR42_RS21930 at 245.985 kb on + strand at 245.986 kb on - strand at 245.986 kb on - strand at 245.997 kb on + strand at 245.997 kb on + strand at 245.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 243,534 + RR42_RS21910 0.88 +1.2 243,698 + -1.1 243,698 + +1.1 243,698 + -0.1 243,749 + -0.5 243,749 + +0.5 243,783 + +0.8 243,784 - +1.0 243,784 - -1.9 243,821 + +0.6 243,827 + -0.3 243,827 + +1.0 243,827 + -0.8 243,828 - -1.0 243,828 - +1.1 244,358 - -0.0 244,373 + -0.0 244,373 + +0.6 244,474 + -1.2 244,474 + +0.0 244,475 - -0.4 244,475 - +0.3 244,567 - RR42_RS21925 0.17 +1.6 244,679 + RR42_RS21925 0.38 +0.5 244,974 + +1.1 244,975 - +0.7 244,975 - -0.1 244,975 - +0.9 245,346 + RR42_RS21930 0.21 -0.0 245,346 + RR42_RS21930 0.21 -0.0 245,346 + RR42_RS21930 0.21 +2.3 245,347 - RR42_RS21930 0.21 +0.2 245,598 + RR42_RS21930 0.51 +0.4 245,849 - RR42_RS21930 0.81 +2.6 245,898 + RR42_RS21930 0.87 +0.2 245,898 + RR42_RS21930 0.87 +0.0 245,899 - RR42_RS21930 0.87 +0.2 245,899 - RR42_RS21930 0.87 -0.1 245,899 - RR42_RS21930 0.87 +0.1 245,910 + RR42_RS21930 0.88 +1.4 245,985 + +0.1 245,986 - -0.2 245,986 - -0.4 245,997 + -0.6 245,997 + -0.4 245,998 - +1.6
Or see this region's nucleotide sequence