Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21630 and RR42_RS21635 are separated by 28 nucleotides RR42_RS21635 and RR42_RS21640 are separated by 29 nucleotides
RR42_RS21630: RR42_RS21630 - Asp/Glu racemase, at 182,705 to 183,457
_RS21630
RR42_RS21635: RR42_RS21635 - alpha/beta hydrolase, at 183,486 to 184,328
_RS21635
RR42_RS21640: RR42_RS21640 - 2,5-dihydroxypyridine 5,6-dioxygenase, at 184,358 to 185,458
_RS21640
Position (kb) 183
184
185 Strain fitness (log2 ratio) -1
0
1
2 at 182.500 kb on + strand at 182.500 kb on + strand at 182.500 kb on + strand at 182.501 kb on - strand at 182.501 kb on - strand at 182.501 kb on - strand at 182.975 kb on + strand, within RR42_RS21630 at 183.114 kb on - strand, within RR42_RS21630 at 183.116 kb on - strand, within RR42_RS21630 at 183.383 kb on + strand at 183.383 kb on + strand at 183.452 kb on + strand at 183.665 kb on + strand, within RR42_RS21635 at 183.666 kb on - strand, within RR42_RS21635 at 183.666 kb on - strand, within RR42_RS21635 at 183.669 kb on + strand, within RR42_RS21635 at 183.669 kb on + strand, within RR42_RS21635 at 183.669 kb on + strand, within RR42_RS21635 at 183.671 kb on + strand, within RR42_RS21635 at 183.910 kb on - strand, within RR42_RS21635 at 183.931 kb on - strand, within RR42_RS21635 at 184.365 kb on + strand at 184.581 kb on - strand, within RR42_RS21640 at 185.060 kb on + strand, within RR42_RS21640 at 185.061 kb on - strand, within RR42_RS21640 at 185.061 kb on - strand, within RR42_RS21640 at 185.061 kb on - strand, within RR42_RS21640 at 185.061 kb on - strand, within RR42_RS21640 at 185.108 kb on + strand, within RR42_RS21640 at 185.109 kb on - strand, within RR42_RS21640 at 185.109 kb on - strand, within RR42_RS21640 at 185.109 kb on - strand, within RR42_RS21640 at 185.109 kb on - strand, within RR42_RS21640 at 185.110 kb on + strand, within RR42_RS21640 at 185.110 kb on + strand, within RR42_RS21640 at 185.111 kb on - strand, within RR42_RS21640 at 185.201 kb on + strand, within RR42_RS21640 at 185.202 kb on - strand, within RR42_RS21640 at 185.202 kb on - strand, within RR42_RS21640
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 182,500 + -1.3 182,500 + -1.7 182,500 + -0.4 182,501 - +0.3 182,501 - -0.1 182,501 - +0.0 182,975 + RR42_RS21630 0.36 +1.7 183,114 - RR42_RS21630 0.54 -1.4 183,116 - RR42_RS21630 0.55 +1.2 183,383 + +2.6 183,383 + -0.9 183,452 + -1.2 183,665 + RR42_RS21635 0.21 -0.7 183,666 - RR42_RS21635 0.21 +0.4 183,666 - RR42_RS21635 0.21 +0.6 183,669 + RR42_RS21635 0.22 +0.0 183,669 + RR42_RS21635 0.22 +0.1 183,669 + RR42_RS21635 0.22 +0.5 183,671 + RR42_RS21635 0.22 -1.5 183,910 - RR42_RS21635 0.50 -0.4 183,931 - RR42_RS21635 0.53 +1.0 184,365 + +0.1 184,581 - RR42_RS21640 0.20 +0.6 185,060 + RR42_RS21640 0.64 -0.3 185,061 - RR42_RS21640 0.64 +0.7 185,061 - RR42_RS21640 0.64 +0.6 185,061 - RR42_RS21640 0.64 -1.0 185,061 - RR42_RS21640 0.64 -0.5 185,108 + RR42_RS21640 0.68 +1.6 185,109 - RR42_RS21640 0.68 +0.2 185,109 - RR42_RS21640 0.68 -0.3 185,109 - RR42_RS21640 0.68 +1.0 185,109 - RR42_RS21640 0.68 +0.4 185,110 + RR42_RS21640 0.68 -0.2 185,110 + RR42_RS21640 0.68 -0.6 185,111 - RR42_RS21640 0.68 +1.6 185,201 + RR42_RS21640 0.77 -1.2 185,202 - RR42_RS21640 0.77 +0.7 185,202 - RR42_RS21640 0.77 -0.2
Or see this region's nucleotide sequence