Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21450 and RR42_RS21455 are separated by 12 nucleotides RR42_RS21455 and RR42_RS21460 are separated by 36 nucleotides
RR42_RS21450: RR42_RS21450 - hypothetical protein, at 143,233 to 143,598
_RS21450
RR42_RS21455: RR42_RS21455 - transposase, at 143,611 to 144,705
_RS21455
RR42_RS21460: RR42_RS21460 - hypothetical protein, at 144,742 to 144,957
_RS21460
Position (kb)
143
144
145 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 142.667 kb on + strand at 142.668 kb on - strand at 142.668 kb on - strand at 142.696 kb on + strand at 142.697 kb on - strand at 142.844 kb on - strand at 142.844 kb on - strand at 142.855 kb on + strand at 142.891 kb on + strand at 142.891 kb on + strand at 142.891 kb on + strand at 142.892 kb on - strand at 142.894 kb on - strand at 142.894 kb on - strand at 142.960 kb on + strand at 143.016 kb on + strand at 143.060 kb on + strand at 143.060 kb on + strand at 143.061 kb on - strand at 143.156 kb on + strand at 143.261 kb on + strand at 143.261 kb on + strand at 143.275 kb on - strand, within RR42_RS21450 at 143.309 kb on + strand, within RR42_RS21450 at 143.570 kb on + strand at 143.571 kb on - strand at 143.722 kb on + strand, within RR42_RS21455 at 143.741 kb on - strand, within RR42_RS21455 at 143.975 kb on - strand, within RR42_RS21455 at 144.191 kb on - strand, within RR42_RS21455 at 144.636 kb on + strand at 144.636 kb on + strand at 144.766 kb on + strand, within RR42_RS21460 at 144.767 kb on - strand, within RR42_RS21460 at 144.827 kb on + strand, within RR42_RS21460 at 144.828 kb on - strand, within RR42_RS21460 at 144.880 kb on + strand, within RR42_RS21460 at 144.880 kb on + strand, within RR42_RS21460 at 145.012 kb on - strand at 145.100 kb on + strand at 145.100 kb on + strand at 145.100 kb on + strand at 145.100 kb on + strand at 145.103 kb on - strand at 145.192 kb on + strand at 145.192 kb on + strand at 145.192 kb on + strand at 145.204 kb on + strand at 145.204 kb on + strand at 145.205 kb on - strand at 145.243 kb on - strand at 145.326 kb on - strand at 145.561 kb on + strand at 145.593 kb on + strand at 145.595 kb on + strand at 145.640 kb on - strand at 145.668 kb on + strand at 145.686 kb on + strand at 145.687 kb on - strand at 145.700 kb on + strand at 145.700 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 142,667 + +0.0 142,668 - -0.2 142,668 - -0.6 142,696 + +1.0 142,697 - +0.6 142,844 - +0.1 142,844 - +1.4 142,855 + +1.0 142,891 + +0.8 142,891 + -0.6 142,891 + +0.5 142,892 - +1.8 142,894 - -0.1 142,894 - +0.3 142,960 + +0.6 143,016 + -1.5 143,060 + -0.9 143,060 + -3.5 143,061 - +1.7 143,156 + -0.2 143,261 + +0.6 143,261 + +0.0 143,275 - RR42_RS21450 0.11 +0.6 143,309 + RR42_RS21450 0.21 +0.6 143,570 + -0.5 143,571 - +0.9 143,722 + RR42_RS21455 0.10 -0.2 143,741 - RR42_RS21455 0.12 +1.0 143,975 - RR42_RS21455 0.33 +1.0 144,191 - RR42_RS21455 0.53 +1.7 144,636 + +0.6 144,636 + +0.4 144,766 + RR42_RS21460 0.11 -0.9 144,767 - RR42_RS21460 0.12 -0.9 144,827 + RR42_RS21460 0.39 +1.3 144,828 - RR42_RS21460 0.40 +0.1 144,880 + RR42_RS21460 0.64 +1.0 144,880 + RR42_RS21460 0.64 -0.7 145,012 - -0.2 145,100 + -0.6 145,100 + +0.3 145,100 + +1.6 145,100 + +0.2 145,103 - -0.1 145,192 + -1.5 145,192 + -0.9 145,192 + -1.2 145,204 + -0.9 145,204 + +0.6 145,205 - -0.4 145,243 - -1.3 145,326 - +0.7 145,561 + -0.6 145,593 + -2.0 145,595 + -3.1 145,640 - -1.6 145,668 + -0.1 145,686 + +0.2 145,687 - +0.1 145,700 + -0.3 145,700 + +0.0
Or see this region's nucleotide sequence